miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 3' -56.1 NC_002687.1 + 200149 1.12 0.004364
Target:  5'- uGCCAAUCGCCACCACCGUAUCCCCUCg -3'
miRNA:   3'- -CGGUUAGCGGUGGUGGCAUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 194526 0.93 0.072855
Target:  5'- gGUgAAUCGCCACCACCGUAUCCCCcCg -3'
miRNA:   3'- -CGgUUAGCGGUGGUGGCAUAGGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 38504 0.77 0.547231
Target:  5'- uCCGAUgUGCCGCCACCG-GUgCCCUCg -3'
miRNA:   3'- cGGUUA-GCGGUGGUGGCaUAgGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 85070 0.74 0.682277
Target:  5'- cCCAAUCGCCGCCACa-----CCCUCu -3'
miRNA:   3'- cGGUUAGCGGUGGUGgcauagGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 224470 0.73 0.757347
Target:  5'- cGCCAG-CGCCaccGCCACCGcGUCCCg-- -3'
miRNA:   3'- -CGGUUaGCGG---UGGUGGCaUAGGGgag -5'
10358 3' -56.1 NC_002687.1 + 256035 0.73 0.766365
Target:  5'- gGCCAucgucGUCGCUACCACCGUcAUCaCCa- -3'
miRNA:   3'- -CGGU-----UAGCGGUGGUGGCA-UAGgGGag -5'
10358 3' -56.1 NC_002687.1 + 60564 0.73 0.766365
Target:  5'- cGCgGGUCGCCAuCCACCGacaaaCCCUUg -3'
miRNA:   3'- -CGgUUAGCGGU-GGUGGCauag-GGGAG- -5'
10358 3' -56.1 NC_002687.1 + 241509 0.73 0.766365
Target:  5'- uGCCGAaaucaCGCCGCCACCGUuggCCaCCg- -3'
miRNA:   3'- -CGGUUa----GCGGUGGUGGCAua-GG-GGag -5'
10358 3' -56.1 NC_002687.1 + 307283 0.72 0.809692
Target:  5'- uGCCAGcaccaccacCGCCACCGCCGccgAUCUCCa- -3'
miRNA:   3'- -CGGUUa--------GCGGUGGUGGCa--UAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 171560 0.72 0.809692
Target:  5'- uGCCAuAUCGUC-CUACCc-AUCCCCUCg -3'
miRNA:   3'- -CGGU-UAGCGGuGGUGGcaUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 307444 0.71 0.825256
Target:  5'- cGCUgc-CGUCACCGCCGUcaccgccGUCCCCaUCa -3'
miRNA:   3'- -CGGuuaGCGGUGGUGGCA-------UAGGGG-AG- -5'
10358 3' -56.1 NC_002687.1 + 225347 0.71 0.826059
Target:  5'- uCCAG-CuCCACCGCCGcUGUCCCCa- -3'
miRNA:   3'- cGGUUaGcGGUGGUGGC-AUAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 223869 0.71 0.826059
Target:  5'- aCCAgugcuGUCGCCACCACgGcuUCCCC-Cg -3'
miRNA:   3'- cGGU-----UAGCGGUGGUGgCauAGGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 315824 0.71 0.841792
Target:  5'- cGCCGggUGCCGCCGCCGcacccgaagAUCCCg-- -3'
miRNA:   3'- -CGGUuaGCGGUGGUGGCa--------UAGGGgag -5'
10358 3' -56.1 NC_002687.1 + 72152 0.71 0.849405
Target:  5'- cGCCGucGUCGaUCGCCGCgGUAUcaCCCCUUu -3'
miRNA:   3'- -CGGU--UAGC-GGUGGUGgCAUA--GGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 30354 0.71 0.849405
Target:  5'- cGCCAAUCGUCACCGCUGgaUGUCaauCUUg -3'
miRNA:   3'- -CGGUUAGCGGUGGUGGC--AUAGgg-GAG- -5'
10358 3' -56.1 NC_002687.1 + 253142 0.71 0.849405
Target:  5'- cGCaCAcagGUCACCACCGUGUCCCauuUCa -3'
miRNA:   3'- -CG-GUuagCGGUGGUGGCAUAGGGg--AG- -5'
10358 3' -56.1 NC_002687.1 + 133374 0.71 0.849405
Target:  5'- uCCAAUCG-CACCACC--AUCCCCg- -3'
miRNA:   3'- cGGUUAGCgGUGGUGGcaUAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 162235 0.71 0.856104
Target:  5'- gGCCAAggauguuUCGCCacuACCACCGccUUCCUUCa -3'
miRNA:   3'- -CGGUU-------AGCGG---UGGUGGCauAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 145714 0.7 0.864092
Target:  5'- aGCCGAUCGCguucacccaguaCGCCGCCuUGUCCgcgucagccaCCUCg -3'
miRNA:   3'- -CGGUUAGCG------------GUGGUGGcAUAGG----------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.