miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 3' -56.1 NC_002687.1 + 38504 0.77 0.547231
Target:  5'- uCCGAUgUGCCGCCACCG-GUgCCCUCg -3'
miRNA:   3'- cGGUUA-GCGGUGGUGGCaUAgGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 199750 0.67 0.962943
Target:  5'- uGUCAA-CGCCGuCCGCCuGUG-CCCgCUCg -3'
miRNA:   3'- -CGGUUaGCGGU-GGUGG-CAUaGGG-GAG- -5'
10358 3' -56.1 NC_002687.1 + 247879 0.67 0.971755
Target:  5'- aGCCAcuuUCGCCACCAauCCuUGUCCa-UCg -3'
miRNA:   3'- -CGGUu--AGCGGUGGU--GGcAUAGGggAG- -5'
10358 3' -56.1 NC_002687.1 + 323391 0.66 0.982923
Target:  5'- -aCAAucUCGCCACCACCcu-UCCUC-Ca -3'
miRNA:   3'- cgGUU--AGCGGUGGUGGcauAGGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 171560 0.72 0.809692
Target:  5'- uGCCAuAUCGUC-CUACCc-AUCCCCUCg -3'
miRNA:   3'- -CGGU-UAGCGGuGGUGGcaUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 307444 0.71 0.825256
Target:  5'- cGCUgc-CGUCACCGCCGUcaccgccGUCCCCaUCa -3'
miRNA:   3'- -CGGuuaGCGGUGGUGGCA-------UAGGGG-AG- -5'
10358 3' -56.1 NC_002687.1 + 133374 0.71 0.849405
Target:  5'- uCCAAUCG-CACCACC--AUCCCCg- -3'
miRNA:   3'- cGGUUAGCgGUGGUGGcaUAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 253142 0.71 0.849405
Target:  5'- cGCaCAcagGUCACCACCGUGUCCCauuUCa -3'
miRNA:   3'- -CG-GUuagCGGUGGUGGCAUAGGGg--AG- -5'
10358 3' -56.1 NC_002687.1 + 321487 0.7 0.891173
Target:  5'- cGCCcc-CGCuCACCACCa-GUCCCCUg -3'
miRNA:   3'- -CGGuuaGCG-GUGGUGGcaUAGGGGAg -5'
10358 3' -56.1 NC_002687.1 + 180047 0.67 0.959622
Target:  5'- uCCAGUgGCUccaaACCACCGaUGaucUCCCCUg -3'
miRNA:   3'- cGGUUAgCGG----UGGUGGC-AU---AGGGGAg -5'
10358 3' -56.1 NC_002687.1 + 18274 0.69 0.914988
Target:  5'- cCCAcacucaCGCCGCCGCCucuugCCCCUCc -3'
miRNA:   3'- cGGUua----GCGGUGGUGGcaua-GGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 130385 0.7 0.884701
Target:  5'- cGCCAgcuacaccAUCGCUACCACCcc--CUCCUCc -3'
miRNA:   3'- -CGGU--------UAGCGGUGGUGGcauaGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 85070 0.74 0.682277
Target:  5'- cCCAAUCGCCGCCACa-----CCCUCu -3'
miRNA:   3'- cGGUUAGCGGUGGUGgcauagGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 315642 0.68 0.930124
Target:  5'- aGCUuggcUGUCACCACCGUccccaccGUCCCCa- -3'
miRNA:   3'- -CGGuua-GCGGUGGUGGCA-------UAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 241509 0.73 0.766365
Target:  5'- uGCCGAaaucaCGCCGCCACCGUuggCCaCCg- -3'
miRNA:   3'- -CGGUUa----GCGGUGGUGGCAua-GG-GGag -5'
10358 3' -56.1 NC_002687.1 + 162235 0.71 0.856104
Target:  5'- gGCCAAggauguuUCGCCacuACCACCGccUUCCUUCa -3'
miRNA:   3'- -CGGUU-------AGCGG---UGGUGGCauAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 199444 0.67 0.959622
Target:  5'- aGUCGAUCGCCuCCACC---UCCUCg- -3'
miRNA:   3'- -CGGUUAGCGGuGGUGGcauAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 308488 0.67 0.971755
Target:  5'- aGCUAcgCGgcuuccaCACUACCGUgaacAUUCCCUCg -3'
miRNA:   3'- -CGGUuaGCg------GUGGUGGCA----UAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 307283 0.72 0.809692
Target:  5'- uGCCAGcaccaccacCGCCACCGCCGccgAUCUCCa- -3'
miRNA:   3'- -CGGUUa--------GCGGUGGUGGCa--UAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 315824 0.71 0.841792
Target:  5'- cGCCGggUGCCGCCGCCGcacccgaagAUCCCg-- -3'
miRNA:   3'- -CGGUuaGCGGUGGUGGCa--------UAGGGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.