miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 5' -62.7 NC_002687.1 + 66997 0.66 0.801744
Target:  5'- gAUGAGCGuGGCcaaaccgucguACAGGgGGGCcauGGCGg- -3'
miRNA:   3'- -UGCUCGC-CCG-----------UGUCCgCCUG---CCGCaa -5'
10358 5' -62.7 NC_002687.1 + 203987 0.66 0.801744
Target:  5'- cCGGccGCGGuGUACAGaCGGAUGGUGUa -3'
miRNA:   3'- uGCU--CGCC-CGUGUCcGCCUGCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 128966 0.66 0.793497
Target:  5'- aGCuAGCGGauCGgAGGCGGGCGcGCGUUu -3'
miRNA:   3'- -UGcUCGCCc-GUgUCCGCCUGC-CGCAA- -5'
10358 5' -62.7 NC_002687.1 + 331220 0.66 0.793497
Target:  5'- aGCGAGCGGGCcuGCuguGGCGu-CaGCGUUc -3'
miRNA:   3'- -UGCUCGCCCG--UGu--CCGCcuGcCGCAA- -5'
10358 5' -62.7 NC_002687.1 + 225644 0.66 0.793497
Target:  5'- uCGAGCuGGaGCcggACAGGgGGGUGGCGUg -3'
miRNA:   3'- uGCUCG-CC-CG---UGUCCgCCUGCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 316016 0.66 0.776643
Target:  5'- uGCcGGUGGGgACGGuGgGGACGGUGg- -3'
miRNA:   3'- -UGcUCGCCCgUGUC-CgCCUGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 283196 0.66 0.768049
Target:  5'- -gGGGCGGcaGCAcCAGGCGcGGCGGgGg- -3'
miRNA:   3'- ugCUCGCC--CGU-GUCCGC-CUGCCgCaa -5'
10358 5' -62.7 NC_002687.1 + 38981 0.66 0.759354
Target:  5'- aGCGAGggaaaGGGCACGGaugauuuccaGGGCGGCGg- -3'
miRNA:   3'- -UGCUCg----CCCGUGUCcg--------CCUGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 224150 0.66 0.759354
Target:  5'- gGCGcuGGCGcuGGCGCuGGCGGugGCGGUGg- -3'
miRNA:   3'- -UGC--UCGC--CCGUGuCCGCC--UGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 251985 0.66 0.759354
Target:  5'- aAUGAGCGcGGCGCcgAGG-GGuacCGGCGUUu -3'
miRNA:   3'- -UGCUCGC-CCGUG--UCCgCCu--GCCGCAA- -5'
10358 5' -62.7 NC_002687.1 + 224120 0.66 0.759354
Target:  5'- gGCGguGGCGcuGGCGCuGGCGGugGCGGUGg- -3'
miRNA:   3'- -UGC--UCGC--CCGUGuCCGCC--UGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 173548 0.66 0.756727
Target:  5'- gGCGgaGGCGGaggugggacuggagGCGCAGGUGGA-GGCGg- -3'
miRNA:   3'- -UGC--UCGCC--------------CGUGUCCGCCUgCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 324957 0.67 0.750564
Target:  5'- gGCGAGCGGGauCGGGCGGGCa----- -3'
miRNA:   3'- -UGCUCGCCCguGUCCGCCUGccgcaa -5'
10358 5' -62.7 NC_002687.1 + 324574 0.67 0.750564
Target:  5'- gGCGAGCGGGauCGGGCGGGCa----- -3'
miRNA:   3'- -UGCUCGCCCguGUCCGCCUGccgcaa -5'
10358 5' -62.7 NC_002687.1 + 325341 0.67 0.750564
Target:  5'- gGCGAGCGGGauCGGGCGGGCa----- -3'
miRNA:   3'- -UGCUCGCCCguGUCCGCCUGccgcaa -5'
10358 5' -62.7 NC_002687.1 + 217566 0.67 0.74968
Target:  5'- -aGAcGCGGGUgauccguaccGCAacgggguGGCGGGCGGCGa- -3'
miRNA:   3'- ugCU-CGCCCG----------UGU-------CCGCCUGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 226817 0.67 0.741687
Target:  5'- gGCGguGGCGGugGCGguGGCGGAgCGGUGa- -3'
miRNA:   3'- -UGC--UCGCC--CGUguCCGCCU-GCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 173590 0.67 0.741687
Target:  5'- gGCGgaGGCGgaGGCGgGGGCGGA-GGCGg- -3'
miRNA:   3'- -UGC--UCGC--CCGUgUCCGCCUgCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 259567 0.67 0.732728
Target:  5'- uUGAGCaaacaGGCGCAGGCGGgACuGCGa- -3'
miRNA:   3'- uGCUCGc----CCGUGUCCGCC-UGcCGCaa -5'
10358 5' -62.7 NC_002687.1 + 225588 0.68 0.68698
Target:  5'- -gGAGCGGGgGguGGUGcuggaGACGGCGg- -3'
miRNA:   3'- ugCUCGCCCgUguCCGC-----CUGCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.