miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 5' -49.5 NC_002687.1 + 14396 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 16708 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 131238 0.66 0.999939
Target:  5'- aUGAUAAACGCCAacaGCGCgUCACgagGCGa -3'
miRNA:   3'- -AUUAUUUGUGGUca-CGCG-AGUGg--UGC- -5'
10359 5' -49.5 NC_002687.1 + 209247 0.67 0.999572
Target:  5'- aGAUGAACGacaaCAaUGgGCUCugCACGa -3'
miRNA:   3'- aUUAUUUGUg---GUcACgCGAGugGUGC- -5'
10359 5' -49.5 NC_002687.1 + 68043 0.68 0.999201
Target:  5'- cGGUGAcgGCACCGG-GUGC-CACCAUc -3'
miRNA:   3'- aUUAUU--UGUGGUCaCGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 224503 0.66 0.999867
Target:  5'- ----cAGCGCCAGcgccaGCGC-CACCGCc -3'
miRNA:   3'- auuauUUGUGGUCa----CGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 200357 1.09 0.024639
Target:  5'- uUAAUAAACACCAGUGCGCUCACCACGa -3'
miRNA:   3'- -AUUAUUUGUGGUCACGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 317077 0.72 0.982994
Target:  5'- -cAUGAACaucaACCGGUGCGCcgGCCAUGg -3'
miRNA:   3'- auUAUUUG----UGGUCACGCGagUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 153020 0.66 0.999829
Target:  5'- ---gAAACAuCCuGUGCGCUgCACaCGCa -3'
miRNA:   3'- auuaUUUGU-GGuCACGCGA-GUG-GUGc -5'
10359 5' -49.5 NC_002687.1 + 55921 0.67 0.999726
Target:  5'- cUGGUAcGGCACCGGUGUaaUCACCuCGu -3'
miRNA:   3'- -AUUAU-UUGUGGUCACGcgAGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 233546 0.67 0.9997
Target:  5'- ---gAGACACCAGggauuugaguuucGCGCUugauucuucggcCACCACGu -3'
miRNA:   3'- auuaUUUGUGGUCa------------CGCGA------------GUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 194466 0.67 0.999657
Target:  5'- ----uGACAgCAGUGCGCUCAgCu-- -3'
miRNA:   3'- auuauUUGUgGUCACGCGAGUgGugc -5'
10359 5' -49.5 NC_002687.1 + 50005 0.67 0.99947
Target:  5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3'
miRNA:   3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5'
10359 5' -49.5 NC_002687.1 + 51876 0.67 0.99947
Target:  5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3'
miRNA:   3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5'
10359 5' -49.5 NC_002687.1 + 253495 0.7 0.995441
Target:  5'- cGGUGGugACCuguGUGCGCUgACCGu- -3'
miRNA:   3'- aUUAUUugUGGu--CACGCGAgUGGUgc -5'
10359 5' -49.5 NC_002687.1 + 39315 0.7 0.993885
Target:  5'- ----cGACACCAGcaUGUUCACCACGu -3'
miRNA:   3'- auuauUUGUGGUCacGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 223871 0.71 0.99078
Target:  5'- ------cCACCAGUGCugucGC-CACCACGg -3'
miRNA:   3'- auuauuuGUGGUCACG----CGaGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 165330 0.71 0.988099
Target:  5'- ---cGAuCAgCAGgugugagGCGCUCGCCACGg -3'
miRNA:   3'- auuaUUuGUgGUCa------CGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 125423 0.71 0.988099
Target:  5'- -uGUGGGCACCAG-GCGCaUCGaCACGa -3'
miRNA:   3'- auUAUUUGUGGUCaCGCG-AGUgGUGC- -5'
10359 5' -49.5 NC_002687.1 + 118471 0.71 0.986551
Target:  5'- --cUGAACGCCGGggGUGCUCcaAUCACGu -3'
miRNA:   3'- auuAUUUGUGGUCa-CGCGAG--UGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.