miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 5' -49.5 NC_002687.1 + 95178 0.73 0.961481
Target:  5'- ----cGACACguGUGUGCUCGCgACGc -3'
miRNA:   3'- auuauUUGUGguCACGCGAGUGgUGC- -5'
10359 5' -49.5 NC_002687.1 + 14396 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 16112 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 131238 0.66 0.999939
Target:  5'- aUGAUAAACGCCAacaGCGCgUCACgagGCGa -3'
miRNA:   3'- -AUUAUUUGUGGUca-CGCG-AGUGg--UGC- -5'
10359 5' -49.5 NC_002687.1 + 256213 0.71 0.991929
Target:  5'- aAGUGccGACACgGGUGCGCagGCgACGg -3'
miRNA:   3'- aUUAU--UUGUGgUCACGCGagUGgUGC- -5'
10359 5' -49.5 NC_002687.1 + 110688 0.69 0.997157
Target:  5'- ---cGAGgACCAGUGCGCcCGCUcCGa -3'
miRNA:   3'- auuaUUUgUGGUCACGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 6350 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 301027 0.68 0.998581
Target:  5'- aGAUGAACGCCAGcucgGUGUaCACCuCGu -3'
miRNA:   3'- aUUAUUUGUGGUCa---CGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 209247 0.67 0.999572
Target:  5'- aGAUGAACGacaaCAaUGgGCUCugCACGa -3'
miRNA:   3'- aUUAUUUGUg---GUcACgCGAGugGUGC- -5'
10359 5' -49.5 NC_002687.1 + 279138 0.67 0.999783
Target:  5'- ---aGAGCACCAGUGg---CACCugGg -3'
miRNA:   3'- auuaUUUGUGGUCACgcgaGUGGugC- -5'
10359 5' -49.5 NC_002687.1 + 13323 0.67 0.999726
Target:  5'- aGGUGuGCAUCuGUGCacaUCACCACGu -3'
miRNA:   3'- aUUAUuUGUGGuCACGcg-AGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 68043 0.68 0.999201
Target:  5'- cGGUGAcgGCACCGG-GUGC-CACCAUc -3'
miRNA:   3'- aUUAUU--UGUGGUCaCGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 145851 0.73 0.964883
Target:  5'- ---aGAGCGCCAG-GCGUUCGCCucCGu -3'
miRNA:   3'- auuaUUUGUGGUCaCGCGAGUGGu-GC- -5'
10359 5' -49.5 NC_002687.1 + 84979 0.67 0.999726
Target:  5'- gGAUGGacguucGCGCCGuGcGCGCUCAUCGCc -3'
miRNA:   3'- aUUAUU------UGUGGU-CaCGCGAGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 200034 0.72 0.982994
Target:  5'- -cAUAAGCugCAGUcGCGUUCGCCcUGg -3'
miRNA:   3'- auUAUUUGugGUCA-CGCGAGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 298354 0.68 0.999027
Target:  5'- gAAUGGGCGCCu-UGCGUgUGCCGCGa -3'
miRNA:   3'- aUUAUUUGUGGucACGCGaGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 11042 0.67 0.999783
Target:  5'- ----cAGCACCAagucuUGCGCcgCACCACa -3'
miRNA:   3'- auuauUUGUGGUc----ACGCGa-GUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 15520 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 100661 0.72 0.984851
Target:  5'- ----cGACACCGGUGcCGCcuUCACCGuCGg -3'
miRNA:   3'- auuauUUGUGGUCAC-GCG--AGUGGU-GC- -5'
10359 5' -49.5 NC_002687.1 + 5526 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.