miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 5' -49.5 NC_002687.1 + 200357 1.09 0.024639
Target:  5'- uUAAUAAACACCAGUGCGCUCACCACGa -3'
miRNA:   3'- -AUUAUUUGUGGUCACGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 95178 0.73 0.961481
Target:  5'- ----cGACACguGUGUGCUCGCgACGc -3'
miRNA:   3'- auuauUUGUGguCACGCGAGUGgUGC- -5'
10359 5' -49.5 NC_002687.1 + 145851 0.73 0.964883
Target:  5'- ---aGAGCGCCAG-GCGUUCGCCucCGu -3'
miRNA:   3'- auuaUUUGUGGUCaCGCGAGUGGu-GC- -5'
10359 5' -49.5 NC_002687.1 + 200034 0.72 0.982994
Target:  5'- -cAUAAGCugCAGUcGCGUUCGCCcUGg -3'
miRNA:   3'- auUAUUUGugGUCA-CGCGAGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 317077 0.72 0.982994
Target:  5'- -cAUGAACaucaACCGGUGCGCcgGCCAUGg -3'
miRNA:   3'- auUAUUUG----UGGUCACGCGagUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 100661 0.72 0.984851
Target:  5'- ----cGACACCGGUGcCGCcuUCACCGuCGg -3'
miRNA:   3'- auuauUUGUGGUCAC-GCG--AGUGGU-GC- -5'
10359 5' -49.5 NC_002687.1 + 118471 0.71 0.986551
Target:  5'- --cUGAACGCCGGggGUGCUCcaAUCACGu -3'
miRNA:   3'- auuAUUUGUGGUCa-CGCGAG--UGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 125423 0.71 0.988099
Target:  5'- -uGUGGGCACCAG-GCGCaUCGaCACGa -3'
miRNA:   3'- auUAUUUGUGGUCaCGCG-AGUgGUGC- -5'
10359 5' -49.5 NC_002687.1 + 165330 0.71 0.988099
Target:  5'- ---cGAuCAgCAGgugugagGCGCUCGCCACGg -3'
miRNA:   3'- auuaUUuGUgGUCa------CGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 223871 0.71 0.99078
Target:  5'- ------cCACCAGUGCugucGC-CACCACGg -3'
miRNA:   3'- auuauuuGUGGUCACG----CGaGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 256213 0.71 0.991929
Target:  5'- aAGUGccGACACgGGUGCGCagGCgACGg -3'
miRNA:   3'- aUUAU--UUGUGgUCACGCGagUGgUGC- -5'
10359 5' -49.5 NC_002687.1 + 39315 0.7 0.993885
Target:  5'- ----cGACACCAGcaUGUUCACCACGu -3'
miRNA:   3'- auuauUUGUGGUCacGCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 253495 0.7 0.995441
Target:  5'- cGGUGGugACCuguGUGCGCUgACCGu- -3'
miRNA:   3'- aUUAUUugUGGu--CACGCGAgUGGUgc -5'
10359 5' -49.5 NC_002687.1 + 332886 0.7 0.996088
Target:  5'- ---aGAACGCCagGGUGUGCUgcaGCCGCa -3'
miRNA:   3'- auuaUUUGUGG--UCACGCGAg--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 110688 0.69 0.997157
Target:  5'- ---cGAGgACCAGUGCGCcCGCUcCGa -3'
miRNA:   3'- auuaUUUgUGGUCACGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 6350 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 5526 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 301027 0.68 0.998581
Target:  5'- aGAUGAACGCCAGcucgGUGUaCACCuCGu -3'
miRNA:   3'- aUUAUUUGUGGUCa---CGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 263327 0.68 0.998822
Target:  5'- ---aAGGCACCAGU-CGC-CACCAUc -3'
miRNA:   3'- auuaUUUGUGGUCAcGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 291350 0.68 0.999027
Target:  5'- -----cGCGCCGGUGUGCgcgCGCCuuGu -3'
miRNA:   3'- auuauuUGUGGUCACGCGa--GUGGugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.