Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 5526 | 0.69 | 0.997972 |
Target: 5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3' miRNA: 3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 6350 | 0.69 | 0.997972 |
Target: 5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3' miRNA: 3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 11042 | 0.67 | 0.999783 |
Target: 5'- ----cAGCACCAagucuUGCGCcgCACCACa -3' miRNA: 3'- auuauUUGUGGUc----ACGCGa-GUGGUGc -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 13323 | 0.67 | 0.999726 |
Target: 5'- aGGUGuGCAUCuGUGCacaUCACCACGu -3' miRNA: 3'- aUUAUuUGUGGuCACGcg-AGUGGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 14396 | 0.66 | 0.999829 |
Target: 5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3' miRNA: 3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 15520 | 0.66 | 0.999829 |
Target: 5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3' miRNA: 3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 16112 | 0.66 | 0.999829 |
Target: 5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3' miRNA: 3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 16708 | 0.66 | 0.999829 |
Target: 5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3' miRNA: 3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 17222 | 0.66 | 0.999939 |
Target: 5'- ---gGAACACgAGUGUGUUgACCuCGu -3' miRNA: 3'- auuaUUUGUGgUCACGCGAgUGGuGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 38506 | 0.66 | 0.999829 |
Target: 5'- cGAUGugccgcCACCGGUGCcCUCgauaACCGCGa -3' miRNA: 3'- aUUAUuu----GUGGUCACGcGAG----UGGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 39315 | 0.7 | 0.993885 |
Target: 5'- ----cGACACCAGcaUGUUCACCACGu -3' miRNA: 3'- auuauUUGUGGUCacGCGAGUGGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 50005 | 0.67 | 0.99947 |
Target: 5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3' miRNA: 3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 51876 | 0.67 | 0.99947 |
Target: 5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3' miRNA: 3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 55921 | 0.67 | 0.999726 |
Target: 5'- cUGGUAcGGCACCGGUGUaaUCACCuCGu -3' miRNA: 3'- -AUUAU-UUGUGGUCACGcgAGUGGuGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 68043 | 0.68 | 0.999201 |
Target: 5'- cGGUGAcgGCACCGG-GUGC-CACCAUc -3' miRNA: 3'- aUUAUU--UGUGGUCaCGCGaGUGGUGc -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 71764 | 0.66 | 0.999897 |
Target: 5'- gAGUAcuuGACGCCguaugcGGUGgcacCGCUCACUGCGg -3' miRNA: 3'- aUUAU---UUGUGG------UCAC----GCGAGUGGUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 84979 | 0.67 | 0.999726 |
Target: 5'- gGAUGGacguucGCGCCGuGcGCGCUCAUCGCc -3' miRNA: 3'- aUUAUU------UGUGGU-CaCGCGAGUGGUGc -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 95178 | 0.73 | 0.961481 |
Target: 5'- ----cGACACguGUGUGCUCGCgACGc -3' miRNA: 3'- auuauUUGUGguCACGCGAGUGgUGC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 100661 | 0.72 | 0.984851 |
Target: 5'- ----cGACACCGGUGcCGCcuUCACCGuCGg -3' miRNA: 3'- auuauUUGUGGUCAC-GCG--AGUGGU-GC- -5' |
|||||||
10359 | 5' | -49.5 | NC_002687.1 | + | 110688 | 0.69 | 0.997157 |
Target: 5'- ---cGAGgACCAGUGCGCcCGCUcCGa -3' miRNA: 3'- auuaUUUgUGGUCACGCGaGUGGuGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home