miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10362 3' -64.3 NC_002687.1 + 182081 0.66 0.751429
Target:  5'- -uCCUCGGCGGUCgCgCCCGCUacgacguaCCCa- -3'
miRNA:   3'- cuGGAGCCGCUAGgG-GGGUGG--------GGGag -5'
10362 3' -64.3 NC_002687.1 + 248762 0.66 0.742721
Target:  5'- aGCCUugagaCGGCGAUCCUCCCGgCCag-Ca -3'
miRNA:   3'- cUGGA-----GCCGCUAGGGGGGUgGGggaG- -5'
10362 3' -64.3 NC_002687.1 + 145782 0.66 0.737458
Target:  5'- cGCCUCGGCGAUggCCgCCUcggacauggacgcgcGCCUgCUCg -3'
miRNA:   3'- cUGGAGCCGCUA--GGgGGG---------------UGGGgGAG- -5'
10362 3' -64.3 NC_002687.1 + 199102 0.66 0.733935
Target:  5'- cGACCa---CGAUCCCugucuCCCugCCCCUCu -3'
miRNA:   3'- -CUGGagccGCUAGGG-----GGGugGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 27496 0.66 0.725077
Target:  5'- cGCCcgaaaGGCGccUCCCCC-CCCCCUUg -3'
miRNA:   3'- cUGGag---CCGCuaGGGGGGuGGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 23876 0.66 0.725077
Target:  5'- -cCCUUGuGUG--CCCCCC-CCCCCUUg -3'
miRNA:   3'- cuGGAGC-CGCuaGGGGGGuGGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 21225 0.67 0.698142
Target:  5'- aACCUCuggaGGC-AUCCaCCuCCGCCCCCg- -3'
miRNA:   3'- cUGGAG----CCGcUAGG-GG-GGUGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 30239 0.67 0.698142
Target:  5'- -uCCUCGGCaa-CCCCCCGgCCUCg- -3'
miRNA:   3'- cuGGAGCCGcuaGGGGGGUgGGGGag -5'
10362 3' -64.3 NC_002687.1 + 267719 0.67 0.66163
Target:  5'- gGAUCUCaGGCagucuucuuGUCCCCCCuCCCCCc- -3'
miRNA:   3'- -CUGGAG-CCGc--------UAGGGGGGuGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 11757 0.67 0.66163
Target:  5'- cGGCCUUGGCcg-CUUCCCGCUUCUUCa -3'
miRNA:   3'- -CUGGAGCCGcuaGGGGGGUGGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 314534 0.67 0.652438
Target:  5'- -uCCgUGGCGAcggCCCCACCCCCUa -3'
miRNA:   3'- cuGGaGCCGCUaggGGGGUGGGGGAg -5'
10362 3' -64.3 NC_002687.1 + 266767 0.68 0.624807
Target:  5'- uACCUgGGUGAUgCCCCgGCCUCUg- -3'
miRNA:   3'- cUGGAgCCGCUAgGGGGgUGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 308247 0.68 0.615598
Target:  5'- -cCCUgGGCGGgcuccgCCCCUCACCaCCC-Ca -3'
miRNA:   3'- cuGGAgCCGCUa-----GGGGGGUGG-GGGaG- -5'
10362 3' -64.3 NC_002687.1 + 114954 0.68 0.615598
Target:  5'- -uCCgUCGGCGAguauccuucgCCUCCUucgccacauaGCCCCCUCa -3'
miRNA:   3'- cuGG-AGCCGCUa---------GGGGGG----------UGGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 231207 0.68 0.595382
Target:  5'- uGCCUCGGUcagccaaccgucuGGcacuaucucucacUCCCCCCACUCCCc- -3'
miRNA:   3'- cUGGAGCCG-------------CU-------------AGGGGGGUGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 308420 0.69 0.578918
Target:  5'- cACC-CGGCGA-CCCCggcggggcgggCgCGCCCCCUCc -3'
miRNA:   3'- cUGGaGCCGCUaGGGG-----------G-GUGGGGGAG- -5'
10362 3' -64.3 NC_002687.1 + 57155 0.69 0.578918
Target:  5'- uGCCUCGGCGAcaauuuuuUCgaCCCCGCCCagCUUu -3'
miRNA:   3'- cUGGAGCCGCU--------AGg-GGGGUGGGg-GAG- -5'
10362 3' -64.3 NC_002687.1 + 18699 0.69 0.560742
Target:  5'- cGGCCaCGGCGucacugucAUCaCCgCCCGCCCCCg- -3'
miRNA:   3'- -CUGGaGCCGC--------UAG-GG-GGGUGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 297340 0.69 0.551712
Target:  5'- aACCUCcugGGCGcUCCggCCCCAUCCCCg- -3'
miRNA:   3'- cUGGAG---CCGCuAGG--GGGGUGGGGGag -5'
10362 3' -64.3 NC_002687.1 + 311104 0.69 0.551712
Target:  5'- cGCCaUCGuGCGugcgucauuaCCCCCCcCCCCCUCc -3'
miRNA:   3'- cUGG-AGC-CGCua--------GGGGGGuGGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.