miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10388 5' -61.8 NC_002687.1 + 297340 0.66 0.869187
Target:  5'- aCGCGCGCgauGGUGUCGGcGGacugCUugCGg -3'
miRNA:   3'- aGUGCGCG---UCGCAGCCaCCg---GGugGC- -5'
10388 5' -61.8 NC_002687.1 + 329770 0.66 0.869187
Target:  5'- aUCGCugcuGCGCcgaGGCGUgccCGGUGGCgUgGCCGg -3'
miRNA:   3'- -AGUG----CGCG---UCGCA---GCCACCG-GgUGGC- -5'
10388 5' -61.8 NC_002687.1 + 4438 0.66 0.862363
Target:  5'- gCACGCGCAGUG-CGGgcacagGGa--GCCGa -3'
miRNA:   3'- aGUGCGCGUCGCaGCCa-----CCgggUGGC- -5'
10388 5' -61.8 NC_002687.1 + 250876 0.66 0.862363
Target:  5'- gUCcCGCGUGGaGUCGGUGcaaUCCGCCGu -3'
miRNA:   3'- -AGuGCGCGUCgCAGCCACc--GGGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 236938 0.66 0.840879
Target:  5'- aUCACGaUGCAcaaGUUGG-GGCCgACCGg -3'
miRNA:   3'- -AGUGC-GCGUcg-CAGCCaCCGGgUGGC- -5'
10388 5' -61.8 NC_002687.1 + 97754 0.66 0.839395
Target:  5'- -aGCGUugGCGGCGUggauguucucguugcUGGcaccgcuggcaccgcUGGCCCACCGg -3'
miRNA:   3'- agUGCG--CGUCGCA---------------GCC---------------ACCGGGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 276145 0.66 0.833396
Target:  5'- gUCGCGC-CGGCGUCGaUGaGCCUGCg- -3'
miRNA:   3'- -AGUGCGcGUCGCAGCcAC-CGGGUGgc -5'
10388 5' -61.8 NC_002687.1 + 258269 0.66 0.833396
Target:  5'- gUCACGgacaGCGGCGUCGGUcuaagcgaGGCUgACg- -3'
miRNA:   3'- -AGUGCg---CGUCGCAGCCA--------CCGGgUGgc -5'
10388 5' -61.8 NC_002687.1 + 295379 0.66 0.832639
Target:  5'- aUCACcCGCgAGCuGUuugauacCGGUGGCCCGCg- -3'
miRNA:   3'- -AGUGcGCG-UCG-CA-------GCCACCGGGUGgc -5'
10388 5' -61.8 NC_002687.1 + 296995 0.67 0.810062
Target:  5'- aUCGCGCGCGuCcUCGGUGGCgaugucUCGCUGu -3'
miRNA:   3'- -AGUGCGCGUcGcAGCCACCG------GGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 279267 0.67 0.802008
Target:  5'- cCACGaGCAGCaggUGGUgccggcaccaccGGCCCACCa -3'
miRNA:   3'- aGUGCgCGUCGca-GCCA------------CCGGGUGGc -5'
10388 5' -61.8 NC_002687.1 + 84618 0.67 0.785526
Target:  5'- gUCAguCGCGCuggacgugagAGCGaUGGUGGCCUGCuCGg -3'
miRNA:   3'- -AGU--GCGCG----------UCGCaGCCACCGGGUG-GC- -5'
10388 5' -61.8 NC_002687.1 + 277505 0.68 0.759963
Target:  5'- cCGCGCGCuGCcucGUCGGcGG-CCAUCGg -3'
miRNA:   3'- aGUGCGCGuCG---CAGCCaCCgGGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 224129 0.68 0.751245
Target:  5'- gCugGCGCuGGCGguggCGGUGGCgCUggcGCUGg -3'
miRNA:   3'- aGugCGCG-UCGCa---GCCACCG-GG---UGGC- -5'
10388 5' -61.8 NC_002687.1 + 123566 0.68 0.74244
Target:  5'- gUCGCGUGUGGCGaCGGUGucuuguauaCCCACUGc -3'
miRNA:   3'- -AGUGCGCGUCGCaGCCACc--------GGGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 331674 0.69 0.68818
Target:  5'- aCA-GUGuCGGUGUCGGUGGCuCCACg- -3'
miRNA:   3'- aGUgCGC-GUCGCAGCCACCG-GGUGgc -5'
10388 5' -61.8 NC_002687.1 + 298416 0.69 0.669712
Target:  5'- aCGCGCGCGGCGgCGGccgcGGCCUuAUCa -3'
miRNA:   3'- aGUGCGCGUCGCaGCCa---CCGGG-UGGc -5'
10388 5' -61.8 NC_002687.1 + 225208 0.7 0.660437
Target:  5'- -gGCGcCGCcGCGUCGGcGGCUCuCCGa -3'
miRNA:   3'- agUGC-GCGuCGCAGCCaCCGGGuGGC- -5'
10388 5' -61.8 NC_002687.1 + 57339 0.7 0.660437
Target:  5'- uUCGCGgGCGGUGUCcGUGcGCC-GCCGa -3'
miRNA:   3'- -AGUGCgCGUCGCAGcCAC-CGGgUGGC- -5'
10388 5' -61.8 NC_002687.1 + 295096 0.7 0.653933
Target:  5'- gCGCGCGCGGgGagcagccaaaugaucUCGGUGGCCguuuuggUACCa -3'
miRNA:   3'- aGUGCGCGUCgC---------------AGCCACCGG-------GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.