Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10409 | 5' | -57.4 | NC_002687.1 | + | 53487 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53552 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53681 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53810 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53939 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaagaugugcaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54004 | 0.68 | 0.859251 |
Target: 5'- uGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54133 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaaggugugcaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54470 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54535 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54664 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54729 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54858 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 55004 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguuuguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 55069 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaagggugugcaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 55134 | 0.68 | 0.866575 |
Target: 5'- uGUGCUGCa-GGGGGACAaaagggugugcaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 201459 | 0.66 | 0.933291 |
Target: 5'- uUGCUucGCCGGaguAGGGACaAAUCCACgAGu -3' miRNA: 3'- uACGA--CGGCU---UCCCUG-UUGGGUGgUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 227289 | 0.69 | 0.836154 |
Target: 5'- -cGgaGCCGAcGGGGCGacGCCCGCgAAu -3' miRNA: 3'- uaCgaCGGCUuCCCUGU--UGGGUGgUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 227811 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 227851 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 227916 | 0.66 | 0.946862 |
Target: 5'- cGUGCUGUa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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