miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 5' -57.4 NC_002687.1 + 5511 0.69 0.811499
Target:  5'- uGUGCUGUgcgCGggGGGACGACCaGCg-- -3'
miRNA:   3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5'
10409 5' -57.4 NC_002687.1 + 6335 0.7 0.79429
Target:  5'- gGUGCUGUgcgCGggGGGACGACCaGCg-- -3'
miRNA:   3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5'
10409 5' -57.4 NC_002687.1 + 8296 0.7 0.749018
Target:  5'- gAUGCUGCUGgcGGGcACcguuuuCCCGCCGGa -3'
miRNA:   3'- -UACGACGGCuuCCC-UGuu----GGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 8668 0.67 0.906224
Target:  5'- -gGUUGuCCGgcGGGAaaacgguGCCCGCCAGc -3'
miRNA:   3'- uaCGAC-GGCuuCCCUgu-----UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 27812 0.74 0.562711
Target:  5'- cGUGCagGCauaGGAGGGACAACCCaaagucgGCCAAg -3'
miRNA:   3'- -UACGa-CGg--CUUCCCUGUUGGG-------UGGUU- -5'
10409 5' -57.4 NC_002687.1 + 37870 0.68 0.851736
Target:  5'- cUGCUGCgGAGGGcGACAAguguUgCACCAGa -3'
miRNA:   3'- uACGACGgCUUCC-CUGUU----GgGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 42903 0.68 0.866575
Target:  5'- gAUGUUGCUaAGGGGACcccuGCCC-CCAAu -3'
miRNA:   3'- -UACGACGGcUUCCCUGu---UGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 48152 0.68 0.851736
Target:  5'- cAUGCcGaCUGggGGGACAGCCU-CCGGu -3'
miRNA:   3'- -UACGaC-GGCuuCCCUGUUGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51304 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51369 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51434 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51709 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaagcguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52461 0.68 0.862204
Target:  5'- cGUGCUGCaagaggacaaaagggUGAGGGGACAacagugugcguaGCUCACUAAa -3'
miRNA:   3'- -UACGACG---------------GCUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52780 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAg -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52845 0.67 0.900146
Target:  5'- cGUGCUGCa-AGGGGACGaaagggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52910 0.72 0.642433
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACCAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52975 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaacgggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 53040 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaacgggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 53105 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaaugugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 53358 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaggggugugcaGCUCACUAAg -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.