Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10409 | 5' | -57.4 | NC_002687.1 | + | 283514 | 1.04 | 0.007475 |
Target: 5'- gAUGCUGCCGAAGGGACAACCCACCAAg -3' miRNA: 3'- -UACGACGGCUUCCCUGUUGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 257026 | 0.76 | 0.451552 |
Target: 5'- uUGCUGCCGAcGuGGugAuACCCGCCGAa -3' miRNA: 3'- uACGACGGCUuC-CCugU-UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 27812 | 0.74 | 0.562711 |
Target: 5'- cGUGCagGCauaGGAGGGACAACCCaaagucgGCCAAg -3' miRNA: 3'- -UACGa-CGg--CUUCCCUGUUGGG-------UGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 284649 | 0.73 | 0.612769 |
Target: 5'- gGUGCUGCCGGAaaaaaGACCCACCAAg -3' miRNA: 3'- -UACGACGGCUUcccugUUGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 52910 | 0.72 | 0.642433 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACCAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 8296 | 0.7 | 0.749018 |
Target: 5'- gAUGCUGCUGgcGGGcACcguuuuCCCGCCGGa -3' miRNA: 3'- -UACGACGGCuuCCC-UGuu----GGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 6335 | 0.7 | 0.79429 |
Target: 5'- gGUGCUGUgcgCGggGGGACGACCaGCg-- -3' miRNA: 3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 5511 | 0.69 | 0.811499 |
Target: 5'- uGUGCUGUgcgCGggGGGACGACCaGCg-- -3' miRNA: 3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 227289 | 0.69 | 0.836154 |
Target: 5'- -cGgaGCCGAcGGGGCGacGCCCGCgAAu -3' miRNA: 3'- uaCgaCGGCUuCCCUGU--UGGGUGgUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53487 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 52780 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAg -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 51709 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaagcguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 51434 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 51369 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 51304 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54535 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 54470 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53939 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaagaugugcaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53810 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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10409 | 5' | -57.4 | NC_002687.1 | + | 53552 | 0.68 | 0.851736 |
Target: 5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3' miRNA: 3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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