miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 5' -57.4 NC_002687.1 + 8296 0.7 0.749018
Target:  5'- gAUGCUGCUGgcGGGcACcguuuuCCCGCCGGa -3'
miRNA:   3'- -UACGACGGCuuCCC-UGuu----GGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229276 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260906 0.68 0.872998
Target:  5'- -gGCUGCCGAcaaacagAGGGACAagagACCCGa--- -3'
miRNA:   3'- uaCGACGGCU-------UCCCUGU----UGGGUgguu -5'
10409 5' -57.4 NC_002687.1 + 301176 0.66 0.946862
Target:  5'- -gGUUGCCc-GGGGACGcaucuugacggGCCCAUCAAc -3'
miRNA:   3'- uaCGACGGcuUCCCUGU-----------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 227811 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 227851 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228110 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228241 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAuagaggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228628 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229211 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaagguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228887 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaagguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228371 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAuagaggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 6335 0.7 0.79429
Target:  5'- gGUGCUGUgcgCGggGGGACGACCaGCg-- -3'
miRNA:   3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5'
10409 5' -57.4 NC_002687.1 + 229016 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 5511 0.69 0.811499
Target:  5'- uGUGCUGUgcgCGggGGGACGACCaGCg-- -3'
miRNA:   3'- -UACGACG---GCuuCCCUGUUGGgUGguu -5'
10409 5' -57.4 NC_002687.1 + 228306 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaagggugcguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229081 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 42903 0.68 0.866575
Target:  5'- gAUGUUGCUaAGGGGACcccuGCCC-CCAAu -3'
miRNA:   3'- -UACGACGGcUUCCCUGu---UGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 37870 0.68 0.851736
Target:  5'- cUGCUGCgGAGGGcGACAAguguUgCACCAGa -3'
miRNA:   3'- uACGACGgCUUCC-CUGUU----GgGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 227981 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.