miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 5' -57.4 NC_002687.1 + 228500 0.66 0.946862
Target:  5'- cGUGCUGUa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260906 0.68 0.872998
Target:  5'- -gGCUGCCGAcaaacagAGGGACAagagACCCGa--- -3'
miRNA:   3'- uaCGACGGCU-------UCCCUGU----UGGGUgguu -5'
10409 5' -57.4 NC_002687.1 + 227851 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 227811 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 37870 0.68 0.851736
Target:  5'- cUGCUGCgGAGGGcGACAAguguUgCACCAGa -3'
miRNA:   3'- uACGACGgCUUCC-CUGUU----GgGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 55134 0.68 0.866575
Target:  5'- uGUGCUGCa-GGGGGACAaaagggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 296948 0.67 0.912081
Target:  5'- cUGCUGCacCGggGGGugAGCUUGCuCGAc -3'
miRNA:   3'- uACGACG--GCuuCCCugUUGGGUG-GUU- -5'
10409 5' -57.4 NC_002687.1 + 54858 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54729 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54664 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52780 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAg -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51709 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaagcguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51434 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51369 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260689 0.68 0.872998
Target:  5'- uUGC-GCCGAGuGGACAAuccguauCCCACCAc -3'
miRNA:   3'- uACGaCGGCUUcCCUGUU-------GGGUGGUu -5'
10409 5' -57.4 NC_002687.1 + 53810 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 53939 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaagaugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54133 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaaggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54470 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54535 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.