miRNA display CGI


Results 41 - 60 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 17522 0.68 0.841739
Target:  5'- cAUGGUGGauguacacuccaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- -UGUCAUCg-----------UCGU--CGCCGuCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 280305 0.69 0.83543
Target:  5'- uCAGgAGCGGUAGCGGauccacgaucacCGGCAucacGCGGCa -3'
miRNA:   3'- uGUCaUCGUCGUCGCC------------GUCGU----CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 300600 0.69 0.819185
Target:  5'- -aAGUGGCGGaAGuCGGCGGUggaAGCGGUa -3'
miRNA:   3'- ugUCAUCGUCgUC-GCCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 102502 0.69 0.819185
Target:  5'- aACAGcAGCAGCaacAGCGaauuuuGCAGCaacaacaacAGCAGCa -3'
miRNA:   3'- -UGUCaUCGUCG---UCGC------CGUCG---------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 297865 0.69 0.819185
Target:  5'- cCGGUGGCuGCGGCGaaCAGUAGCAa- -3'
miRNA:   3'- uGUCAUCGuCGUCGCc-GUCGUCGUcg -5'
10410 3' -57.6 NC_002687.1 + 310849 0.69 0.810822
Target:  5'- cGCAGaauuUGGCAGCGaaugguccGgGGCGcguGCGGCGGCg -3'
miRNA:   3'- -UGUC----AUCGUCGU--------CgCCGU---CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 295690 0.69 0.810822
Target:  5'- aAUAG-AGCGcgguGCAGCGG-AGCAGCGGg -3'
miRNA:   3'- -UGUCaUCGU----CGUCGCCgUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 309986 0.69 0.802309
Target:  5'- -gGGUGGgGGCAGCuuacGCAGaagaAGCAGCc -3'
miRNA:   3'- ugUCAUCgUCGUCGc---CGUCg---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282941 0.69 0.802309
Target:  5'- uACAucAGCAGCAGCaGGaaCAGCAaCAGCa -3'
miRNA:   3'- -UGUcaUCGUCGUCG-CC--GUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 89080 0.69 0.802309
Target:  5'- -uGGUGGUGGUGGUGGUGGUGGUGGUg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 279144 0.69 0.797132
Target:  5'- cCAGUGGCAcCuGgGGCAggaaaaagcgcgugcGCAGCGGCg -3'
miRNA:   3'- uGUCAUCGUcGuCgCCGU---------------CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 283001 0.69 0.793653
Target:  5'- gGCuGUAGCAGCuguGCGuGguGCAaUAGCa -3'
miRNA:   3'- -UGuCAUCGUCGu--CGC-CguCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 237119 0.7 0.784862
Target:  5'- aACAGccuGCAGCGGCugGGCAgGCucacGCGGCu -3'
miRNA:   3'- -UGUCau-CGUCGUCG--CCGU-CGu---CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 194488 0.7 0.775944
Target:  5'- aGCGGgcGCAgGCGGaCGGCGuuGaCAGCAGUg -3'
miRNA:   3'- -UGUCauCGU-CGUC-GCCGU--C-GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 27773 0.7 0.775944
Target:  5'- -gGGUAGCuAGCAG-GGguGUuGCGGCg -3'
miRNA:   3'- ugUCAUCG-UCGUCgCCguCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10341 0.7 0.775944
Target:  5'- gGCAGUuguGGCAGUgucauccgaaGGCGGaguGGCuGCGGCg -3'
miRNA:   3'- -UGUCA---UCGUCG----------UCGCCg--UCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 173590 0.7 0.775944
Target:  5'- gGCGGaGGCGGaGGCGGgGGCGGaGGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCGCCgUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 278949 0.7 0.775944
Target:  5'- uCGGUGGUGGCAGCgcagggGGgGGCAGaccCAGCg -3'
miRNA:   3'- uGUCAUCGUCGUCG------CCgUCGUC---GUCG- -5'
10410 3' -57.6 NC_002687.1 + 18231 0.7 0.766906
Target:  5'- cACcGUcGCAGCAcCGGCgaaccccguGGCGGCAGCu -3'
miRNA:   3'- -UGuCAuCGUCGUcGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 114101 0.7 0.757758
Target:  5'- uGCAGcaaAGCGucGCuGCGGCAGCGGUAaucGCg -3'
miRNA:   3'- -UGUCa--UCGU--CGuCGCCGUCGUCGU---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.