miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 17633 0.68 0.841739
Target:  5'- cAUGGUGGauguccgcuccaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- -UGUCAUCg-----------UCGU--CGCCGuCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 17763 0.66 0.927605
Target:  5'- ----aAGCGuuGCAGCcGCAGCGGCuGCu -3'
miRNA:   3'- ugucaUCGU--CGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 17866 0.71 0.710634
Target:  5'- uCAGU-GCcaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- uGUCAuCG--UCGU--CGCCGuCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 18231 0.7 0.766906
Target:  5'- cACcGUcGCAGCAcCGGCgaaccccguGGCGGCAGCu -3'
miRNA:   3'- -UGuCAuCGUCGUcGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 18650 0.77 0.368837
Target:  5'- aGCAGgGGCAGgAGgGGCaagaGGCGGCGGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCgCCG----UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 23663 0.71 0.700991
Target:  5'- aGCAGgcacgccAGCAGCAGaaGUAGCGGCAccuGCa -3'
miRNA:   3'- -UGUCa------UCGUCGUCgcCGUCGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 23964 0.76 0.460931
Target:  5'- --cGUGGCGGCguGGUGGUguGGCAGCAGUg -3'
miRNA:   3'- uguCAUCGUCG--UCGCCG--UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 27773 0.7 0.775944
Target:  5'- -gGGUAGCuAGCAG-GGguGUuGCGGCg -3'
miRNA:   3'- ugUCAUCG-UCGUCgCCguCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 34631 0.66 0.937347
Target:  5'- aACuuGUGGUA-CAGCGGCGGU-GUGGCa -3'
miRNA:   3'- -UGu-CAUCGUcGUCGCCGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 39923 0.68 0.865814
Target:  5'- cCGGauGCAGCAGCGuGUAG-AGCAGUc -3'
miRNA:   3'- uGUCauCGUCGUCGC-CGUCgUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 69043 0.82 0.200083
Target:  5'- gAUGGUGGCGGCGGUGGCGGUGGUgucGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 72556 0.8 0.277363
Target:  5'- gGCGGUGuGuCGGCGGCGGCGGCGuCGGCa -3'
miRNA:   3'- -UGUCAU-C-GUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 78117 0.76 0.452053
Target:  5'- aGCGGUGGUguuucGGCcguGGCGGCGGCgucugaaacGGCAGCa -3'
miRNA:   3'- -UGUCAUCG-----UCG---UCGCCGUCG---------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 85429 0.67 0.905466
Target:  5'- gACAGaGGguGUGGCGGCGauugggguuuucGCGGUAGa -3'
miRNA:   3'- -UGUCaUCguCGUCGCCGU------------CGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 89080 0.69 0.802309
Target:  5'- -uGGUGGUGGUGGUGGUGGUGGUGGUg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 98146 0.68 0.858497
Target:  5'- cCGGUGGUGcCAGCGGUGcCAGCGGUg -3'
miRNA:   3'- uGUCAUCGUcGUCGCCGUcGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 98189 0.71 0.710634
Target:  5'- aGCGGUGcCAGCGGUGcCAGCAGUgccAGCg -3'
miRNA:   3'- -UGUCAUcGUCGUCGCcGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 102400 0.73 0.612724
Target:  5'- aACAGauGCAGCAGauGCAGCAcauacagcacauGCAGCa -3'
miRNA:   3'- -UGUCauCGUCGUCgcCGUCGU------------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 102460 0.81 0.22003
Target:  5'- gACAGgcGCAGCAGCGGCAGauGCAGa -3'
miRNA:   3'- -UGUCauCGUCGUCGCCGUCguCGUCg -5'
10410 3' -57.6 NC_002687.1 + 102502 0.69 0.819185
Target:  5'- aACAGcAGCAGCaacAGCGaauuuuGCAGCaacaacaacAGCAGCa -3'
miRNA:   3'- -UGUCaUCGUCG---UCGC------CGUCG---------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.