miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 10046 0.92 0.048578
Target:  5'- -uGGUGGCAGCAGCaGCAGCAGUAGCa -3'
miRNA:   3'- ugUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10069 0.77 0.376675
Target:  5'- nCAGUAGUAGCAGgGGguGUAGCAc- -3'
miRNA:   3'- uGUCAUCGUCGUCgCCguCGUCGUcg -5'
10410 3' -57.6 NC_002687.1 + 10310 0.96 0.025166
Target:  5'- -aGGUAGCAGCAGUGGCGGCGGCAGUg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10341 0.7 0.775944
Target:  5'- gGCAGUuguGGCAGUgucauccgaaGGCGGaguGGCuGCGGCg -3'
miRNA:   3'- -UGUCA---UCGUCG----------UCGCCg--UCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10388 0.67 0.895631
Target:  5'- -gGGUGGagaaGGCAGCGgacgcgaccgugguuGCAGCAGgGGUg -3'
miRNA:   3'- ugUCAUCg---UCGUCGC---------------CGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 10435 0.77 0.368837
Target:  5'- gUAGaAGCAGUAGCGGUAGCAuCGGCc -3'
miRNA:   3'- uGUCaUCGUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11321 0.93 0.040442
Target:  5'- aGCAGcAGCAGUAGCGGCGGCAGCAGg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCCGUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 11348 0.73 0.583286
Target:  5'- aGCAGcGGguGuCGGa-GCAGCAGCAGCa -3'
miRNA:   3'- -UGUCaUCguC-GUCgcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11381 0.95 0.031917
Target:  5'- cGCGGUAGCAGUAgccGCGGUAGCAGCAGCg -3'
miRNA:   3'- -UGUCAUCGUCGU---CGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11414 1.07 0.004829
Target:  5'- aGCGGUGGCAGCAGCGGCAGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11441 0.83 0.168955
Target:  5'- aGCAGUAGCGGguGUaguagcaaccguGGUAGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCGUCguCG------------CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11501 0.88 0.083697
Target:  5'- aGCGGUcGUAGCAGCGGCGGCuauAGCAGCu -3'
miRNA:   3'- -UGUCAuCGUCGUCGCCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11534 0.67 0.916977
Target:  5'- gACAcgAGCGGUaccAGCGGagauCAGCAGCGGa -3'
miRNA:   3'- -UGUcaUCGUCG---UCGCC----GUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 12031 0.68 0.843299
Target:  5'- uGCAGcAGCAGCaAGUGcagaaaaagacaGCAGUguAGCAGCu -3'
miRNA:   3'- -UGUCaUCGUCG-UCGC------------CGUCG--UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 12174 0.89 0.069898
Target:  5'- gGCAGaaggAGCAGCAGCGGCAGCGGaAGCg -3'
miRNA:   3'- -UGUCa---UCGUCGUCGCCGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 12222 0.76 0.460931
Target:  5'- aGCcGUAaCAGCGGCgGGUGGCAGCAGUa -3'
miRNA:   3'- -UGuCAUcGUCGUCG-CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 12265 0.67 0.903664
Target:  5'- cCAGUGGUcGCGaaacugggcgugacGCGGCuGC-GCAGCg -3'
miRNA:   3'- uGUCAUCGuCGU--------------CGCCGuCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 13019 0.68 0.872937
Target:  5'- aGCAGagAGCuGguGaaaGGCAGCagGGUAGCa -3'
miRNA:   3'- -UGUCa-UCGuCguCg--CCGUCG--UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 17430 0.66 0.927605
Target:  5'- ----aAGCGuuGCAGCcGCAGCGGCuGCu -3'
miRNA:   3'- ugucaUCGU--CGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 17522 0.68 0.841739
Target:  5'- cAUGGUGGauguacacuccaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- -UGUCAUCg-----------UCGU--CGCCGuCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.