miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 291714 1.11 0.002409
Target:  5'- aACAGUAGCAGCAGCGGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11414 1.07 0.004829
Target:  5'- aGCGGUGGCAGCAGCGGCAGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208182 1.01 0.011965
Target:  5'- aACGGUAGCAGCAGCaGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224449 0.96 0.024508
Target:  5'- -uGGUGGUGGCGGCGGCAGCGGCAGCg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10310 0.96 0.025166
Target:  5'- -aGGUAGCAGCAGUGGCGGCGGCAGUg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11381 0.95 0.031917
Target:  5'- cGCGGUAGCAGUAgccGCGGUAGCAGCAGCg -3'
miRNA:   3'- -UGUCAUCGUCGU---CGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11321 0.93 0.040442
Target:  5'- aGCAGcAGCAGUAGCGGCGGCAGCAGg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCCGUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 10046 0.92 0.048578
Target:  5'- -uGGUGGCAGCAGCaGCAGCAGUAGCa -3'
miRNA:   3'- ugUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224198 0.91 0.056805
Target:  5'- gGCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 12174 0.89 0.069898
Target:  5'- gGCAGaaggAGCAGCAGCGGCAGCGGaAGCg -3'
miRNA:   3'- -UGUCa---UCGUCGUCGCCGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 11501 0.88 0.083697
Target:  5'- aGCGGUcGUAGCAGCGGCGGCuauAGCAGCu -3'
miRNA:   3'- -UGUCAuCGUCGUCGCCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282062 0.88 0.085869
Target:  5'- gGCAGgGGCcGUAGUGGCAGCAGCGGCg -3'
miRNA:   3'- -UGUCaUCGuCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226812 0.87 0.095106
Target:  5'- cCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- uGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 293528 0.87 0.105278
Target:  5'- aGCGGUacauguacAGCAGCAGCGaCAGCAGCAGCc -3'
miRNA:   3'- -UGUCA--------UCGUCGUCGCcGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 130723 0.84 0.149447
Target:  5'- gGCGGUGGUGGUGGUGGCGGUGGCGGUg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 307642 0.84 0.149447
Target:  5'- gGCGGUGGCGGUGGUGGUgcuggcacgGGCGGCGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 280956 0.84 0.153177
Target:  5'- gGCGGgGGCcugGGUGGCGGCAGCGGCGGCc -3'
miRNA:   3'- -UGUCaUCG---UCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11441 0.83 0.168955
Target:  5'- aGCAGUAGCGGguGUaguagcaaccguGGUAGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCGUCguCG------------CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282158 0.82 0.195348
Target:  5'- uGCGGcGGCAGCGGCGggaguagggccuGCGGCGGCGGCu -3'
miRNA:   3'- -UGUCaUCGUCGUCGC------------CGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224114 0.82 0.195348
Target:  5'- cGCGGUGGCGGUggcgcuggcgcuGGCGGUGGCGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCG------------UCGCCGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.