miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 77713 0.69 0.995918
Target:  5'- gCC-AAAGAG---GCGAUGGcCGGGGUc -3'
miRNA:   3'- -GGcUUUCUCuauUGCUGCCaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 80606 0.7 0.990781
Target:  5'- gCGAguccAAGGGugccAUGGCGGUGGUCGcGGGCg -3'
miRNA:   3'- gGCU----UUCUC----UAUUGCUGCCAGC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 85434 0.68 0.998431
Target:  5'- gUCGGGacAGAGGgugUGGCGGCGaUUGGGGUu -3'
miRNA:   3'- -GGCUU--UCUCU---AUUGCUGCcAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 93574 0.66 0.999783
Target:  5'- -aGAucGAGAUGuucaucucaaGgGACGGg-GGGGCg -3'
miRNA:   3'- ggCUuuCUCUAU----------UgCUGCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 97227 0.74 0.944834
Target:  5'- aCCGGAGGAGAgagauucGCGAC---CGGGGCg -3'
miRNA:   3'- -GGCUUUCUCUau-----UGCUGccaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 97548 0.67 0.999377
Target:  5'- aCGAucGAGucgGACGGgGGUccaCGGGGa -3'
miRNA:   3'- gGCUuuCUCua-UUGCUgCCA---GCCCCg -5'
10419 5' -51.2 NC_002687.1 + 102256 0.73 0.96636
Target:  5'- aCGGAcauguuuGGAGAUgucgagagGACGACGGUgcuUGGGGUg -3'
miRNA:   3'- gGCUU-------UCUCUA--------UUGCUGCCA---GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 103536 0.75 0.903661
Target:  5'- uCCGGGAGAcaGAgcgGGCGACGGgaugugugCGGGGg -3'
miRNA:   3'- -GGCUUUCU--CUa--UUGCUGCCa-------GCCCCg -5'
10419 5' -51.2 NC_002687.1 + 122943 0.68 0.998774
Target:  5'- --aGAAGAGGUAcGCcggacuuucgugggaGACGGUCGaGGGCc -3'
miRNA:   3'- ggcUUUCUCUAU-UG---------------CUGCCAGC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 123641 0.67 0.999584
Target:  5'- -gGAGAGAgGAUAccguacgugauuACGACGGgaaaGGGGg -3'
miRNA:   3'- ggCUUUCU-CUAU------------UGCUGCCag--CCCCg -5'
10419 5' -51.2 NC_002687.1 + 130756 0.69 0.995918
Target:  5'- gUCGGAGGAGGggguggUAGCGAUGGUguagcuggCGGuGGUg -3'
miRNA:   3'- -GGCUUUCUCU------AUUGCUGCCA--------GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 137414 0.71 0.983435
Target:  5'- aCGAAAucGGUAAUGAaauagGGUCGGGGg -3'
miRNA:   3'- gGCUUUcuCUAUUGCUg----CCAGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 142860 0.7 0.994565
Target:  5'- cCCGAAAGcacAGAUccuCGACccgucGUCGGGGUu -3'
miRNA:   3'- -GGCUUUC---UCUAuu-GCUGc----CAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 146378 0.71 0.985832
Target:  5'- uCCGAcGGAGA-AGCGGCGGcgcagguucuugaagUCgguGGGGCg -3'
miRNA:   3'- -GGCUuUCUCUaUUGCUGCC---------------AG---CCCCG- -5'
10419 5' -51.2 NC_002687.1 + 149789 0.68 0.998899
Target:  5'- gCGAuuGcAGAcuAUGACGGagGGGGUg -3'
miRNA:   3'- gGCUuuC-UCUauUGCUGCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 160951 0.67 0.999584
Target:  5'- cCCGGcGAGAGGUcucucguCGAaauuuuccuaaGGUUGGGGCu -3'
miRNA:   3'- -GGCU-UUCUCUAuu-----GCUg----------CCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 166279 0.66 0.999827
Target:  5'- gCCGAGAGGGugAGC-ACGGcCGGcGCg -3'
miRNA:   3'- -GGCUUUCUCuaUUGcUGCCaGCCcCG- -5'
10419 5' -51.2 NC_002687.1 + 172286 0.66 0.999827
Target:  5'- gCGguGGGGA-----ACGGUgGGGGCg -3'
miRNA:   3'- gGCuuUCUCUauugcUGCCAgCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 173566 0.66 0.999893
Target:  5'- aCUGGAGGcgcAGGUGGaGGCGGaggCGGaGGCg -3'
miRNA:   3'- -GGCUUUC---UCUAUUgCUGCCa--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 196994 0.72 0.977284
Target:  5'- -----cGAGAUAGCGACgGGUCGGucgugaGGCa -3'
miRNA:   3'- ggcuuuCUCUAUUGCUG-CCAGCC------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.