miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 371 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 898 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 1424 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 1951 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 2962 0.68 0.998879
Target:  5'- uCCGA---GGAUAACGA-GGUucuugcuugaccaCGGGGCc -3'
miRNA:   3'- -GGCUuucUCUAUUGCUgCCA-------------GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 3978 0.67 0.999377
Target:  5'- cCUGAAAGGGAggGACGGauggaGGgauugaccgGGGGCg -3'
miRNA:   3'- -GGCUUUCUCUa-UUGCUg----CCag-------CCCCG- -5'
10419 5' -51.2 NC_002687.1 + 7450 0.69 0.996982
Target:  5'- uCCGaAAAGAGGcgAGCGugGGUCauGGUg -3'
miRNA:   3'- -GGC-UUUCUCUa-UUGCugCCAGccCCG- -5'
10419 5' -51.2 NC_002687.1 + 10360 0.66 0.999863
Target:  5'- uCCGAAGGcGGAguggcuGCGGCGa-CGGGGg -3'
miRNA:   3'- -GGCUUUC-UCUau----UGCUGCcaGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 10617 0.8 0.727475
Target:  5'- uCCGAuuGGGAUGugGugGGcgUGGGGUg -3'
miRNA:   3'- -GGCUuuCUCUAUugCugCCa-GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 24067 0.72 0.97234
Target:  5'- gCCGGAGGGGcgu-CGGCGGUgaGGGGg -3'
miRNA:   3'- -GGCUUUCUCuauuGCUGCCAg-CCCCg -5'
10419 5' -51.2 NC_002687.1 + 26445 0.67 0.999479
Target:  5'- aCGAAcggggauguAGAGuAUAuuugaauAUGACGGaggCGGGGCu -3'
miRNA:   3'- gGCUU---------UCUC-UAU-------UGCUGCCa--GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 32657 0.72 0.974901
Target:  5'- uCCGguGGGGAUAGCGA-GGa-GGGGUg -3'
miRNA:   3'- -GGCuuUCUCUAUUGCUgCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 33645 0.66 0.999783
Target:  5'- gCGGAAGAGAcAGCuGGCacaCGGGGUa -3'
miRNA:   3'- gGCUUUCUCUaUUG-CUGccaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 43293 0.66 0.999663
Target:  5'- aUGAGAGGGAcaauuucaGACGGCGcauUgGGGGCa -3'
miRNA:   3'- gGCUUUCUCUa-------UUGCUGCc--AgCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 55486 0.67 0.99949
Target:  5'- --uGGAGGGGUAugGA---UCGGGGCa -3'
miRNA:   3'- ggcUUUCUCUAUugCUgccAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 65266 0.66 0.999729
Target:  5'- gCCGGGAG-GAUAAUGGaugaGG-CGGGcGUa -3'
miRNA:   3'- -GGCUUUCuCUAUUGCUg---CCaGCCC-CG- -5'
10419 5' -51.2 NC_002687.1 + 68989 0.73 0.966664
Target:  5'- uUGGAAGAGAUcgaaGACaccgaGACGGUCGGagaaGGCa -3'
miRNA:   3'- gGCUUUCUCUA----UUG-----CUGCCAGCC----CCG- -5'
10419 5' -51.2 NC_002687.1 + 69041 0.67 0.999584
Target:  5'- gCGAu---GGUGGCGGCGGUggCGGuGGUg -3'
miRNA:   3'- gGCUuucuCUAUUGCUGCCA--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 73335 0.72 0.977284
Target:  5'- uCCGGA-GAcGGUGACGGCGacagcaacgCGGGGCu -3'
miRNA:   3'- -GGCUUuCU-CUAUUGCUGCca-------GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 75910 0.66 0.999863
Target:  5'- cUCGAAcAGAGAauacgaacgaUGACGA-GGUCGGGu- -3'
miRNA:   3'- -GGCUU-UCUCU----------AUUGCUgCCAGCCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.