miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 10617 0.8 0.727475
Target:  5'- uCCGAuuGGGAUGugGugGGcgUGGGGUg -3'
miRNA:   3'- -GGCUuuCUCUAUugCugCCa-GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 142860 0.7 0.994565
Target:  5'- cCCGAAAGcacAGAUccuCGACccgucGUCGGGGUu -3'
miRNA:   3'- -GGCUUUC---UCUAuu-GCUGc----CAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 226034 0.69 0.996982
Target:  5'- -gGggGGuGGUGugGGCGGcCGGGa- -3'
miRNA:   3'- ggCuuUCuCUAUugCUGCCaGCCCcg -5'
10419 5' -51.2 NC_002687.1 + 173566 0.66 0.999893
Target:  5'- aCUGGAGGcgcAGGUGGaGGCGGaggCGGaGGCg -3'
miRNA:   3'- -GGCUUUC---UCUAUUgCUGCCa--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 291052 0.72 0.974901
Target:  5'- uCCGAAAGGGAgagagaaGGCGGggGaGGGCa -3'
miRNA:   3'- -GGCUUUCUCUauug---CUGCCagC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 196994 0.72 0.977284
Target:  5'- -----cGAGAUAGCGACgGGUCGGucgugaGGCa -3'
miRNA:   3'- ggcuuuCUCUAUUGCUG-CCAGCC------CCG- -5'
10419 5' -51.2 NC_002687.1 + 137414 0.71 0.983435
Target:  5'- aCGAAAucGGUAAUGAaauagGGUCGGGGg -3'
miRNA:   3'- gGCUUUcuCUAUUGCUg----CCAGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 200759 0.71 0.985176
Target:  5'- aCGAGAGA-AUcGCuGACaGUCGGGGCc -3'
miRNA:   3'- gGCUUUCUcUAuUG-CUGcCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 80606 0.7 0.990781
Target:  5'- gCGAguccAAGGGugccAUGGCGGUGGUCGcGGGCg -3'
miRNA:   3'- gGCU----UUCUC----UAUUGCUGCCAGC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 295674 0.7 0.992872
Target:  5'- cCCGAaaauguGAGAGAauagAGCG-CGGUgcagcggagcagCGGGGCu -3'
miRNA:   3'- -GGCU------UUCUCUa---UUGCuGCCA------------GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 334529 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 226212 0.71 0.987374
Target:  5'- gCCGGAcagGGGGGUGGCGugGG-CGGccgggacgaacagacGGCu -3'
miRNA:   3'- -GGCUU---UCUCUAUUGCugCCaGCC---------------CCG- -5'
10419 5' -51.2 NC_002687.1 + 68989 0.73 0.966664
Target:  5'- uUGGAAGAGAUcgaaGACaccgaGACGGUCGGagaaGGCa -3'
miRNA:   3'- gGCUUUCUCUA----UUG-----CUGCCAGCC----CCG- -5'
10419 5' -51.2 NC_002687.1 + 335092 0.7 0.991879
Target:  5'- aCGAAAGAcgcAACGAcauCGGagGGGGCa -3'
miRNA:   3'- gGCUUUCUcuaUUGCU---GCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 280957 0.73 0.969597
Target:  5'- gCGggGGccuGGGUGgcggcaGCGGCGGcCGGGGUu -3'
miRNA:   3'- gGCuuUC---UCUAU------UGCUGCCaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 225654 0.71 0.987374
Target:  5'- gCCGGAcagGGGGGUGGCGugGG-CGGccgggacgaacagacGGCu -3'
miRNA:   3'- -GGCUU---UCUCUAUUGCugCCaGCC---------------CCG- -5'
10419 5' -51.2 NC_002687.1 + 328818 0.7 0.992872
Target:  5'- aUCGGAGGuGGUGAgGACaG-CGGGGUc -3'
miRNA:   3'- -GGCUUUCuCUAUUgCUGcCaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 225848 0.69 0.996982
Target:  5'- -gGggGGuGGUGugGGCGGcCGGGa- -3'
miRNA:   3'- ggCuuUCuCUAUugCUGCCaGCCCcg -5'
10419 5' -51.2 NC_002687.1 + 32657 0.72 0.974901
Target:  5'- uCCGguGGGGAUAGCGA-GGa-GGGGUg -3'
miRNA:   3'- -GGCuuUCUCUAUUGCUgCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 222585 0.72 0.977284
Target:  5'- -----cGAGAUAGCGACgGGUCGGucgugaGGCa -3'
miRNA:   3'- ggcuuuCUCUAUUGCUG-CCAGCC------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.