miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 300471 1.16 0.009743
Target:  5'- cCCGAAAGAGAUAACGACGGUCGGGGCa -3'
miRNA:   3'- -GGCUUUCUCUAUUGCUGCCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 10617 0.8 0.727475
Target:  5'- uCCGAuuGGGAUGugGugGGcgUGGGGUg -3'
miRNA:   3'- -GGCUuuCUCUAUugCugCCa-GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 199092 0.76 0.877879
Target:  5'- aCCGGAcGAGAgGGCGACGGuuuUCGGGauGCa -3'
miRNA:   3'- -GGCUUuCUCUaUUGCUGCC---AGCCC--CG- -5'
10419 5' -51.2 NC_002687.1 + 103536 0.75 0.903661
Target:  5'- uCCGGGAGAcaGAgcgGGCGACGGgaugugugCGGGGg -3'
miRNA:   3'- -GGCUUUCU--CUa--UUGCUGCCa-------GCCCCg -5'
10419 5' -51.2 NC_002687.1 + 97227 0.74 0.944834
Target:  5'- aCCGGAGGAGAgagauucGCGAC---CGGGGCg -3'
miRNA:   3'- -GGCUUUCUCUau-----UGCUGccaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 102256 0.73 0.96636
Target:  5'- aCGGAcauguuuGGAGAUgucgagagGACGACGGUgcuUGGGGUg -3'
miRNA:   3'- gGCUU-------UCUCUA--------UUGCUGCCA---GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 68989 0.73 0.966664
Target:  5'- uUGGAAGAGAUcgaaGACaccgaGACGGUCGGagaaGGCa -3'
miRNA:   3'- gGCUUUCUCUA----UUG-----CUGCCAGCC----CCG- -5'
10419 5' -51.2 NC_002687.1 + 280957 0.73 0.969597
Target:  5'- gCGggGGccuGGGUGgcggcaGCGGCGGcCGGGGUu -3'
miRNA:   3'- gGCuuUC---UCUAU------UGCUGCCaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 24067 0.72 0.97234
Target:  5'- gCCGGAGGGGcgu-CGGCGGUgaGGGGg -3'
miRNA:   3'- -GGCUUUCUCuauuGCUGCCAg-CCCCg -5'
10419 5' -51.2 NC_002687.1 + 291052 0.72 0.974901
Target:  5'- uCCGAAAGGGAgagagaaGGCGGggGaGGGCa -3'
miRNA:   3'- -GGCUUUCUCUauug---CUGCCagC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 32657 0.72 0.974901
Target:  5'- uCCGguGGGGAUAGCGA-GGa-GGGGUg -3'
miRNA:   3'- -GGCuuUCUCUAUUGCUgCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 210456 0.72 0.974901
Target:  5'- gCUGAAGGGGGauaagggAGCGACGGgagcgaCGGGaGCg -3'
miRNA:   3'- -GGCUUUCUCUa------UUGCUGCCa-----GCCC-CG- -5'
10419 5' -51.2 NC_002687.1 + 222585 0.72 0.977284
Target:  5'- -----cGAGAUAGCGACgGGUCGGucgugaGGCa -3'
miRNA:   3'- ggcuuuCUCUAUUGCUG-CCAGCC------CCG- -5'
10419 5' -51.2 NC_002687.1 + 196994 0.72 0.977284
Target:  5'- -----cGAGAUAGCGACgGGUCGGucgugaGGCa -3'
miRNA:   3'- ggcuuuCUCUAUUGCUG-CCAGCC------CCG- -5'
10419 5' -51.2 NC_002687.1 + 73335 0.72 0.977284
Target:  5'- uCCGGA-GAcGGUGACGGCGacagcaacgCGGGGCu -3'
miRNA:   3'- -GGCUUuCU-CUAUUGCUGCca-------GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 137414 0.71 0.983435
Target:  5'- aCGAAAucGGUAAUGAaauagGGUCGGGGg -3'
miRNA:   3'- gGCUUUcuCUAUUGCUg----CCAGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 200759 0.71 0.985176
Target:  5'- aCGAGAGA-AUcGCuGACaGUCGGGGCc -3'
miRNA:   3'- gGCUUUCUcUAuUG-CUGcCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 146378 0.71 0.985832
Target:  5'- uCCGAcGGAGA-AGCGGCGGcgcagguucuugaagUCgguGGGGCg -3'
miRNA:   3'- -GGCUuUCUCUaUUGCUGCC---------------AG---CCCCG- -5'
10419 5' -51.2 NC_002687.1 + 225654 0.71 0.987374
Target:  5'- gCCGGAcagGGGGGUGGCGugGG-CGGccgggacgaacagacGGCu -3'
miRNA:   3'- -GGCUU---UCUCUAUUGCugCCaGCC---------------CCG- -5'
10419 5' -51.2 NC_002687.1 + 226212 0.71 0.987374
Target:  5'- gCCGGAcagGGGGGUGGCGugGG-CGGccgggacgaacagacGGCu -3'
miRNA:   3'- -GGCUU---UCUCUAUUGCugCCaGCC---------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.