miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 217589 0.69 0.999572
Target:  5'- aCGGGGUGGCggGCGGcgauuGCUCGugggaauuuGAGCCc -3'
miRNA:   3'- -GCUCUACCG--UGUCuu---UGAGCu--------CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 240149 0.71 0.994874
Target:  5'- aGGGAUGaGCACcgAGAGGCUgGugcuGGAGCCu -3'
miRNA:   3'- gCUCUAC-CGUG--UCUUUGAgC----UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 38312 0.66 0.999992
Target:  5'- uCGGGAUGGCgACAGuugGACcaaauggaUCGAucGAGCUg -3'
miRNA:   3'- -GCUCUACCG-UGUCu--UUG--------AGCU--CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 200744 0.66 0.999973
Target:  5'- uGAGGUcgGGCGCGGAcGa--GAGAAUCg -3'
miRNA:   3'- gCUCUA--CCGUGUCUuUgagCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 56813 0.68 0.999781
Target:  5'- cCGAG--GGCACGGAAACacaguaugcCGuGGACCg -3'
miRNA:   3'- -GCUCuaCCGUGUCUUUGa--------GCuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 138650 0.72 0.994083
Target:  5'- uGAGGUuuucGGUagACAGAagAACUCGGGAGCg -3'
miRNA:   3'- gCUCUA----CCG--UGUCU--UUGAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 272035 0.67 0.999964
Target:  5'- uCGuuAUGGCG-GGAuuCUCGGGAGCg -3'
miRNA:   3'- -GCucUACCGUgUCUuuGAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 223463 0.73 0.989892
Target:  5'- uGAcGGUGGUgcugGCGGAggUUCGGGAugCg -3'
miRNA:   3'- gCU-CUACCG----UGUCUuuGAGCUCUugG- -5'
10423 3' -48.9 NC_002687.1 + 225278 0.73 0.989892
Target:  5'- aCGGGAUGGaacuugACGGAGACUCGcAGGAg- -3'
miRNA:   3'- -GCUCUACCg-----UGUCUUUGAGC-UCUUgg -5'
10423 3' -48.9 NC_002687.1 + 158200 0.68 0.9998
Target:  5'- -cGGGUGacacaucccucuucCGCAGAuACUCGAGGGCCu -3'
miRNA:   3'- gcUCUACc-------------GUGUCUuUGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 149384 0.66 0.999992
Target:  5'- aGAGAacGGaGCGGAcacGugUCGAGAACg -3'
miRNA:   3'- gCUCUa-CCgUGUCU---UugAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 174590 0.68 0.999656
Target:  5'- ----cUGGCGaAGGAACUUGAGAugCa -3'
miRNA:   3'- gcucuACCGUgUCUUUGAGCUCUugG- -5'
10423 3' -48.9 NC_002687.1 + 140689 0.67 0.999918
Target:  5'- aGAGGUGGCucACAGAGuCaaGGGAcaggcGCCa -3'
miRNA:   3'- gCUCUACCG--UGUCUUuGagCUCU-----UGG- -5'
10423 3' -48.9 NC_002687.1 + 223878 0.66 0.999973
Target:  5'- uCGGGGUGGCuuucgcGCAaauGAAGCUUGguGGGAUCg -3'
miRNA:   3'- -GCUCUACCG------UGU---CUUUGAGC--UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 157475 0.66 0.99998
Target:  5'- aGuAGAUGGCGCAGAacGACcCacuGAACUg -3'
miRNA:   3'- gC-UCUACCGUGUCU--UUGaGcu-CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 249307 0.69 0.999351
Target:  5'- gCGaAGGUGGUggagucccagAUAGAGACagGGGGGCCg -3'
miRNA:   3'- -GC-UCUACCG----------UGUCUUUGagCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 255339 0.71 0.996746
Target:  5'- cCGAcacGAUGGCGCAGGccagagaaAAC-CGGGAACg -3'
miRNA:   3'- -GCU---CUACCGUGUCU--------UUGaGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 319584 0.67 0.999918
Target:  5'- gCGAGAgaagcacGGcCugGGAGAUgaaGGGAACCg -3'
miRNA:   3'- -GCUCUa------CC-GugUCUUUGag-CUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 22118 0.73 0.988118
Target:  5'- gGAGGUGGCggacgcgcuccgccACAGcuGGCUCGAGAuucgaguugcgGCCg -3'
miRNA:   3'- gCUCUACCG--------------UGUCu-UUGAGCUCU-----------UGG- -5'
10423 3' -48.9 NC_002687.1 + 319014 0.73 0.989892
Target:  5'- aCGGGGUGGCAUuuaggugugauAGGGAUgCGAGuGCCa -3'
miRNA:   3'- -GCUCUACCGUG-----------UCUUUGaGCUCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.