miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 41277 0.82 0.735282
Target:  5'- aGAcGAUGGCGCAGAGgaacuGCUCGAcAGCCa -3'
miRNA:   3'- gCU-CUACCGUGUCUU-----UGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 97381 0.68 0.999781
Target:  5'- gCGAGAucaUGGUGCGuccGAAcaaguCUUGAGGACCu -3'
miRNA:   3'- -GCUCU---ACCGUGU---CUUu----GAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 56813 0.68 0.999781
Target:  5'- cCGAG--GGCACGGAAACacaguaugcCGuGGACCg -3'
miRNA:   3'- -GCUCuaCCGUGUCUUUGa--------GCuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 330772 0.66 0.999992
Target:  5'- gGAGGaGGgGgAGAA--UCGGGGACCg -3'
miRNA:   3'- gCUCUaCCgUgUCUUugAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 225278 0.73 0.989892
Target:  5'- aCGGGAUGGaacuugACGGAGACUCGcAGGAg- -3'
miRNA:   3'- -GCUCUACCg-----UGUCUUUGAGC-UCUUgg -5'
10423 3' -48.9 NC_002687.1 + 223463 0.73 0.989892
Target:  5'- uGAcGGUGGUgcugGCGGAggUUCGGGAugCg -3'
miRNA:   3'- gCU-CUACCG----UGUCUuuGAGCUCUugG- -5'
10423 3' -48.9 NC_002687.1 + 240149 0.71 0.994874
Target:  5'- aGGGAUGaGCACcgAGAGGCUgGugcuGGAGCCu -3'
miRNA:   3'- gCUCUAC-CGUG--UCUUUGAgC----UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 255339 0.71 0.996746
Target:  5'- cCGAcacGAUGGCGCAGGccagagaaAAC-CGGGAACg -3'
miRNA:   3'- -GCU---CUACCGUGUCU--------UUGaGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 249307 0.69 0.999351
Target:  5'- gCGaAGGUGGUggagucccagAUAGAGACagGGGGGCCg -3'
miRNA:   3'- -GC-UCUACCG----------UGUCUUUGagCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 255876 0.68 0.999656
Target:  5'- uGAGGUGGCACuGAcaGACauuUCGgcAGAGCa -3'
miRNA:   3'- gCUCUACCGUGuCU--UUG---AGC--UCUUGg -5'
10423 3' -48.9 NC_002687.1 + 108576 0.69 0.999472
Target:  5'- uCGGGGuUGcGUACuuuGGuguACUCGAGGACCu -3'
miRNA:   3'- -GCUCU-AC-CGUGu--CUu--UGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 175837 0.69 0.999208
Target:  5'- cCGGGGUGGCAUGGGAacgaucauGCUCGAc-AUCg -3'
miRNA:   3'- -GCUCUACCGUGUCUU--------UGAGCUcuUGG- -5'
10423 3' -48.9 NC_002687.1 + 135060 0.79 0.834673
Target:  5'- aCGuGAUGGUcgaauGCGGAAACUUGAGcGCCg -3'
miRNA:   3'- -GCuCUACCG-----UGUCUUUGAGCUCuUGG- -5'
10423 3' -48.9 NC_002687.1 + 217589 0.69 0.999572
Target:  5'- aCGGGGUGGCggGCGGcgauuGCUCGugggaauuuGAGCCc -3'
miRNA:   3'- -GCUCUACCG--UGUCuu---UGAGCu--------CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 108728 0.78 0.887282
Target:  5'- cCGAGAUGGCACugcuugcauGGGACcaagcaGAGAGCCa -3'
miRNA:   3'- -GCUCUACCGUGu--------CUUUGag----CUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 32228 0.7 0.998331
Target:  5'- gCGcGAUGGCACGGGAccACUCGAu---- -3'
miRNA:   3'- -GCuCUACCGUGUCUU--UGAGCUcuugg -5'
10423 3' -48.9 NC_002687.1 + 174590 0.68 0.999656
Target:  5'- ----cUGGCGaAGGAACUUGAGAugCa -3'
miRNA:   3'- gcucuACCGUgUCUUUGAGCUCUugG- -5'
10423 3' -48.9 NC_002687.1 + 293473 0.68 0.999781
Target:  5'- -aAGGUGGUAuCAGcgGAGCUCGAGuuacACCc -3'
miRNA:   3'- gcUCUACCGU-GUC--UUUGAGCUCu---UGG- -5'
10423 3' -48.9 NC_002687.1 + 164668 0.75 0.955619
Target:  5'- aGAGAUGGUgacgaugagguagACGGAGACgCGGGGACg -3'
miRNA:   3'- gCUCUACCG-------------UGUCUUUGaGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 138650 0.72 0.994083
Target:  5'- uGAGGUuuucGGUagACAGAagAACUCGGGAGCg -3'
miRNA:   3'- gCUCUA----CCG--UGUCU--UUGAGCUCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.