miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 8495 0.73 0.987068
Target:  5'- aGuGGUGGCauucaaACAGAGACUCG-GggUCa -3'
miRNA:   3'- gCuCUACCG------UGUCUUUGAGCuCuuGG- -5'
10423 3' -48.9 NC_002687.1 + 20394 0.75 0.955998
Target:  5'- aCGAGGUGGUuucugcgaggGCGGAuauCUCGAGGcgACCu -3'
miRNA:   3'- -GCUCUACCG----------UGUCUuu-GAGCUCU--UGG- -5'
10423 3' -48.9 NC_002687.1 + 22118 0.73 0.988118
Target:  5'- gGAGGUGGCggacgcgcuccgccACAGcuGGCUCGAGAuucgaguugcgGCCg -3'
miRNA:   3'- gCUCUACCG--------------UGUCu-UUGAGCUCU-----------UGG- -5'
10423 3' -48.9 NC_002687.1 + 32228 0.7 0.998331
Target:  5'- gCGcGAUGGCACGGGAccACUCGAu---- -3'
miRNA:   3'- -GCuCUACCGUGUCUU--UGAGCUcuugg -5'
10423 3' -48.9 NC_002687.1 + 38312 0.66 0.999992
Target:  5'- uCGGGAUGGCgACAGuugGACcaaauggaUCGAucGAGCUg -3'
miRNA:   3'- -GCUCUACCG-UGUCu--UUG--------AGCU--CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 41277 0.82 0.735282
Target:  5'- aGAcGAUGGCGCAGAGgaacuGCUCGAcAGCCa -3'
miRNA:   3'- gCU-CUACCGUGUCUU-----UGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 45927 0.7 0.997648
Target:  5'- gCGGGAaguuuuucaaGGCACccauGGAGCUCGGGGACa -3'
miRNA:   3'- -GCUCUa---------CCGUGu---CUUUGAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 56813 0.68 0.999781
Target:  5'- cCGAG--GGCACGGAAACacaguaugcCGuGGACCg -3'
miRNA:   3'- -GCUCuaCCGUGUCUUUGa--------GCuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 58264 0.67 0.999937
Target:  5'- --cGGUGGUACGcAAACUCuGAaGAACCu -3'
miRNA:   3'- gcuCUACCGUGUcUUUGAG-CU-CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 58731 0.66 0.999985
Target:  5'- uGAGGUaGUACAGcAGCUCGGcGAUCa -3'
miRNA:   3'- gCUCUAcCGUGUCuUUGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 62154 0.68 0.999864
Target:  5'- aGAGGUGaaGCAGcuGAACUCGGGuAUCa -3'
miRNA:   3'- gCUCUACcgUGUC--UUUGAGCUCuUGG- -5'
10423 3' -48.9 NC_002687.1 + 62767 0.66 0.999992
Target:  5'- -aAGAUGGUGCuggcGAAAC-CGAGGuCCa -3'
miRNA:   3'- gcUCUACCGUGu---CUUUGaGCUCUuGG- -5'
10423 3' -48.9 NC_002687.1 + 74427 0.66 0.999973
Target:  5'- cCGAGAgccaGGCACAGGAcC-CGAuGAUCa -3'
miRNA:   3'- -GCUCUa---CCGUGUCUUuGaGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 82914 0.66 0.99998
Target:  5'- uGGGccguGUGGCACGGAAgaagggGCUCGGauuuGGACg -3'
miRNA:   3'- gCUC----UACCGUGUCUU------UGAGCU----CUUGg -5'
10423 3' -48.9 NC_002687.1 + 97052 0.68 0.999781
Target:  5'- gGAGAUGuCGCAGAacGugUCGgcgcuacgcaAGGACCg -3'
miRNA:   3'- gCUCUACcGUGUCU--UugAGC----------UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 97381 0.68 0.999781
Target:  5'- gCGAGAucaUGGUGCGuccGAAcaaguCUUGAGGACCu -3'
miRNA:   3'- -GCUCU---ACCGUGU---CUUu----GAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 108576 0.69 0.999472
Target:  5'- uCGGGGuUGcGUACuuuGGuguACUCGAGGACCu -3'
miRNA:   3'- -GCUCU-AC-CGUGu--CUu--UGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 108728 0.78 0.887282
Target:  5'- cCGAGAUGGCACugcuugcauGGGACcaagcaGAGAGCCa -3'
miRNA:   3'- -GCUCUACCGUGu--------CUUUGag----CUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 111045 0.69 0.999572
Target:  5'- uCGAGcgGGCGCAcuGGucCUCGA-AACCa -3'
miRNA:   3'- -GCUCuaCCGUGU--CUuuGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 116888 0.71 0.996746
Target:  5'- -cGGAUGGCAUAuGAACUgGGGGGCg -3'
miRNA:   3'- gcUCUACCGUGUcUUUGAgCUCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.