miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 304324 1.14 0.017874
Target:  5'- cCGAGAUGGCACAGAAACUCGAGAACCu -3'
miRNA:   3'- -GCUCUACCGUGUCUUUGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 41277 0.82 0.735282
Target:  5'- aGAcGAUGGCGCAGAGgaacuGCUCGAcAGCCa -3'
miRNA:   3'- gCU-CUACCGUGUCUU-----UGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 237950 0.79 0.834673
Target:  5'- uGAGAUGaGCGCAGu--CUCGGGAAgCCg -3'
miRNA:   3'- gCUCUAC-CGUGUCuuuGAGCUCUU-GG- -5'
10423 3' -48.9 NC_002687.1 + 135060 0.79 0.834673
Target:  5'- aCGuGAUGGUcgaauGCGGAAACUUGAGcGCCg -3'
miRNA:   3'- -GCuCUACCG-----UGUCUUUGAGCUCuUGG- -5'
10423 3' -48.9 NC_002687.1 + 108728 0.78 0.887282
Target:  5'- cCGAGAUGGCACugcuugcauGGGACcaagcaGAGAGCCa -3'
miRNA:   3'- -GCUCUACCGUGu--------CUUUGag----CUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 164668 0.75 0.955619
Target:  5'- aGAGAUGGUgacgaugagguagACGGAGACgCGGGGACg -3'
miRNA:   3'- gCUCUACCG-------------UGUCUUUGaGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 196229 0.75 0.955998
Target:  5'- aCGAGGUGGUuucugcgaggGCGGAuauCUCGAGGcgACCu -3'
miRNA:   3'- -GCUCUACCG----------UGUCUuu-GAGCUCU--UGG- -5'
10423 3' -48.9 NC_002687.1 + 221821 0.75 0.955998
Target:  5'- aCGAGGUGGUuucugcgaggGCGGAuauCUCGAGGcgACCu -3'
miRNA:   3'- -GCUCUACCG----------UGUCUuu-GAGCUCU--UGG- -5'
10423 3' -48.9 NC_002687.1 + 20394 0.75 0.955998
Target:  5'- aCGAGGUGGUuucugcgaggGCGGAuauCUCGAGGcgACCu -3'
miRNA:   3'- -GCUCUACCG----------UGUCUuu-GAGCUCU--UGG- -5'
10423 3' -48.9 NC_002687.1 + 163882 0.74 0.981127
Target:  5'- aGAGAUGcuggaguuucuaauGUACA--AGCUCGAGAGCCu -3'
miRNA:   3'- gCUCUAC--------------CGUGUcuUUGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 8495 0.73 0.987068
Target:  5'- aGuGGUGGCauucaaACAGAGACUCG-GggUCa -3'
miRNA:   3'- gCuCUACCG------UGUCUUUGAGCuCuuGG- -5'
10423 3' -48.9 NC_002687.1 + 22118 0.73 0.988118
Target:  5'- gGAGGUGGCggacgcgcuccgccACAGcuGGCUCGAGAuucgaguugcgGCCg -3'
miRNA:   3'- gCUCUACCG--------------UGUCu-UUGAGCUCU-----------UGG- -5'
10423 3' -48.9 NC_002687.1 + 223463 0.73 0.989892
Target:  5'- uGAcGGUGGUgcugGCGGAggUUCGGGAugCg -3'
miRNA:   3'- gCU-CUACCG----UGUCUuuGAGCUCUugG- -5'
10423 3' -48.9 NC_002687.1 + 319014 0.73 0.989892
Target:  5'- aCGGGGUGGCAUuuaggugugauAGGGAUgCGAGuGCCa -3'
miRNA:   3'- -GCUCUACCGUG-----------UCUUUGaGCUCuUGG- -5'
10423 3' -48.9 NC_002687.1 + 225278 0.73 0.989892
Target:  5'- aCGGGAUGGaacuugACGGAGACUCGcAGGAg- -3'
miRNA:   3'- -GCUCUACCg-----UGUCUUUGAGC-UCUUgg -5'
10423 3' -48.9 NC_002687.1 + 236836 0.72 0.99111
Target:  5'- aGAGAuuggugUGGCACGGGAguuGCUCaGGGAuCCu -3'
miRNA:   3'- gCUCU------ACCGUGUCUU---UGAG-CUCUuGG- -5'
10423 3' -48.9 NC_002687.1 + 120353 0.72 0.99221
Target:  5'- uCGAcGAUGGCGCGGca----GAGAACCa -3'
miRNA:   3'- -GCU-CUACCGUGUCuuugagCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 138650 0.72 0.994083
Target:  5'- uGAGGUuuucGGUagACAGAagAACUCGGGAGCg -3'
miRNA:   3'- gCUCUA----CCG--UGUCU--UUGAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 240149 0.71 0.994874
Target:  5'- aGGGAUGaGCACcgAGAGGCUgGugcuGGAGCCu -3'
miRNA:   3'- gCUCUAC-CGUG--UCUUUGAgC----UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 116888 0.71 0.996746
Target:  5'- -cGGAUGGCAUAuGAACUgGGGGGCg -3'
miRNA:   3'- gcUCUACCGUGUcUUUGAgCUCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.