miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10424 3' -57.5 NC_002687.1 + 108106 0.66 0.958471
Target:  5'- ---cGCgGCgUGCCAaGUC-CGCGGCGg -3'
miRNA:   3'- uacaUGgCG-ACGGUgUAGuGCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 34002 0.66 0.95108
Target:  5'- cGUGUGCCaGCUGUCucuUC-CGCGcGCGa -3'
miRNA:   3'- -UACAUGG-CGACGGuguAGuGCGC-CGC- -5'
10424 3' -57.5 NC_002687.1 + 226802 0.66 0.95108
Target:  5'- -gGUGCCGgUGCCG-GUgGCGgUGGCGg -3'
miRNA:   3'- uaCAUGGCgACGGUgUAgUGC-GCCGC- -5'
10424 3' -57.5 NC_002687.1 + 329467 0.66 0.947074
Target:  5'- gAUGUaagAUCGCUGCCACugcGUCACa-GGUGg -3'
miRNA:   3'- -UACA---UGGCGACGGUG---UAGUGcgCCGC- -5'
10424 3' -57.5 NC_002687.1 + 66863 0.66 0.947074
Target:  5'- -cGUGaaGCgGCCACugaucaCACGUGGCGu -3'
miRNA:   3'- uaCAUggCGaCGGUGua----GUGCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 113738 0.66 0.942857
Target:  5'- --uUACCGCUGCCGCAgcgACGCuuuGCu -3'
miRNA:   3'- uacAUGGCGACGGUGUag-UGCGc--CGc -5'
10424 3' -57.5 NC_002687.1 + 312118 0.66 0.938427
Target:  5'- cGUGUgacacaGCCGCgugugcGUCACAgcagcugcCGCGCGGCGc -3'
miRNA:   3'- -UACA------UGGCGa-----CGGUGUa-------GUGCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 23598 0.67 0.92385
Target:  5'- -cGUcACUGCUGCCACAccacCACGCcGCc -3'
miRNA:   3'- uaCA-UGGCGACGGUGUa---GUGCGcCGc -5'
10424 3' -57.5 NC_002687.1 + 316180 0.67 0.92385
Target:  5'- -gGUGCgGCgGCgGCAcCcgGCGCGGCGg -3'
miRNA:   3'- uaCAUGgCGaCGgUGUaG--UGCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 122330 0.67 0.918559
Target:  5'- ----gUCGCUGUaccccaGCAUCAUGCGGCu -3'
miRNA:   3'- uacauGGCGACGg-----UGUAGUGCGCCGc -5'
10424 3' -57.5 NC_002687.1 + 224147 0.67 0.918559
Target:  5'- -gGUGgCGCUGgCGCuggcgCugGCGGUGg -3'
miRNA:   3'- uaCAUgGCGACgGUGua---GugCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 96480 0.67 0.918559
Target:  5'- -cGgggGCCGCgaaccGCCAUGUCGC-CGGCa -3'
miRNA:   3'- uaCa--UGGCGa----CGGUGUAGUGcGCCGc -5'
10424 3' -57.5 NC_002687.1 + 58161 0.67 0.918559
Target:  5'- ---aACCGUUGCCggggcagauGCAaaccacccucucUCACGUGGCGg -3'
miRNA:   3'- uacaUGGCGACGG---------UGU------------AGUGCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 265206 0.67 0.918559
Target:  5'- -aGUGCCG-UGCCGCAgua-GCGGUGc -3'
miRNA:   3'- uaCAUGGCgACGGUGUagugCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 311750 0.68 0.888911
Target:  5'- ---aGCUGCUGUgaCGCA-CACGCGGCu -3'
miRNA:   3'- uacaUGGCGACG--GUGUaGUGCGCCGc -5'
10424 3' -57.5 NC_002687.1 + 11683 0.68 0.882357
Target:  5'- --uUGCUGCUGCUGCAauUCACGCacuauGGCa -3'
miRNA:   3'- uacAUGGCGACGGUGU--AGUGCG-----CCGc -5'
10424 3' -57.5 NC_002687.1 + 21151 0.68 0.882357
Target:  5'- -cGUGCCGCagagGUCACuUCGcCGUGGUGa -3'
miRNA:   3'- uaCAUGGCGa---CGGUGuAGU-GCGCCGC- -5'
10424 3' -57.5 NC_002687.1 + 211297 0.68 0.875603
Target:  5'- uUGUucAgCGCUGCCuCAUUACGgGGCc -3'
miRNA:   3'- uACA--UgGCGACGGuGUAGUGCgCCGc -5'
10424 3' -57.5 NC_002687.1 + 298058 0.69 0.868653
Target:  5'- ---gGCCGCggccGCCGCcgCGCGCGuGCu -3'
miRNA:   3'- uacaUGGCGa---CGGUGuaGUGCGC-CGc -5'
10424 3' -57.5 NC_002687.1 + 11750 0.69 0.868653
Target:  5'- --cUACCGCUGCUGCuac-CGCGGCu -3'
miRNA:   3'- uacAUGGCGACGGUGuaguGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.