Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10426 | 5' | -58.6 | NC_002687.1 | + | 309709 | 1.12 | 0.003225 |
Target: 5'- uCCGCGAUGCGGUCGCUCAUGCGCCGGa -3' miRNA: 3'- -GGCGCUACGCCAGCGAGUACGCGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 295174 | 0.78 | 0.406065 |
Target: 5'- gUGCG-UGCGGUCGUcuuUCGUGCGCCa- -3' miRNA: 3'- gGCGCuACGCCAGCG---AGUACGCGGcc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 118168 | 0.76 | 0.516242 |
Target: 5'- gCUGCGGUGCaGUCGCagagcccgUAUGCGCCGu -3' miRNA: 3'- -GGCGCUACGcCAGCGa-------GUACGCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 224113 | 0.73 | 0.645963 |
Target: 5'- aCGCGGUGgCGGUgGCgcugGCGCUGGc -3' miRNA: 3'- gGCGCUAC-GCCAgCGaguaCGCGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 154301 | 0.7 | 0.790403 |
Target: 5'- aCUGCGAccaaGCGGUCGCcaaguUCGUG-GCCGa -3' miRNA: 3'- -GGCGCUa---CGCCAGCG-----AGUACgCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 276159 | 0.7 | 0.822833 |
Target: 5'- aCGUGAaggccGCGGUCGCgCcgGCGUCGa -3' miRNA: 3'- gGCGCUa----CGCCAGCGaGuaCGCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 57339 | 0.7 | 0.822833 |
Target: 5'- uUCGCGG-GCGGU-GUcCGUGCGCCGc -3' miRNA: 3'- -GGCGCUaCGCCAgCGaGUACGCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 291381 | 0.7 | 0.830591 |
Target: 5'- gCUGCuGcUGCGGUCGCUgCuUGC-CCGGg -3' miRNA: 3'- -GGCG-CuACGCCAGCGA-GuACGcGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 238667 | 0.69 | 0.838196 |
Target: 5'- uCCGCcAUGCGGaUCGUUCGgUGgGCCa- -3' miRNA: 3'- -GGCGcUACGCC-AGCGAGU-ACgCGGcc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 39664 | 0.69 | 0.855795 |
Target: 5'- aCCGCuGAUGUGGUcCGCgaugaaaaaccaccuUUGUGUGUCGGc -3' miRNA: 3'- -GGCG-CUACGCCA-GCG---------------AGUACGCGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 224138 | 0.69 | 0.860044 |
Target: 5'- -nGCGGUGgCGGUgGCgcugGCGCUGGc -3' miRNA: 3'- ggCGCUAC-GCCAgCGaguaCGCGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 263651 | 0.69 | 0.873751 |
Target: 5'- gCGCGuacAUGUcGUCGCUCAUgGCGCuuaCGGg -3' miRNA: 3'- gGCGC---UACGcCAGCGAGUA-CGCG---GCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 198671 | 0.68 | 0.880333 |
Target: 5'- gCCuCGAaGUGGgagCGCUCAUGCGCa-- -3' miRNA: 3'- -GGcGCUaCGCCa--GCGAGUACGCGgcc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 326121 | 0.68 | 0.892935 |
Target: 5'- -aGCGA--UGGUCGCUCAUuccucaGCGCCa- -3' miRNA: 3'- ggCGCUacGCCAGCGAGUA------CGCGGcc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 276022 | 0.68 | 0.898949 |
Target: 5'- gCUGCGAcUGCcucuaccccgGGUgCGCUCAUGgUGCCGa -3' miRNA: 3'- -GGCGCU-ACG----------CCA-GCGAGUAC-GCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 47529 | 0.68 | 0.910388 |
Target: 5'- gCCuCGG-GCGG-CGCagAUGUGCCGGc -3' miRNA: 3'- -GGcGCUaCGCCaGCGagUACGCGGCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 209937 | 0.68 | 0.910388 |
Target: 5'- cCCGUGGUgGCGGUgGUgccgUAUGUGCCc- -3' miRNA: 3'- -GGCGCUA-CGCCAgCGa---GUACGCGGcc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 143602 | 0.67 | 0.921031 |
Target: 5'- cCCGgGAUGCacUCGCggaagUUGUGCGCCGa -3' miRNA: 3'- -GGCgCUACGccAGCG-----AGUACGCGGCc -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 274426 | 0.67 | 0.926051 |
Target: 5'- aCGCGugGCGGUUGUUC-UGaCGCaCGGa -3' miRNA: 3'- gGCGCuaCGCCAGCGAGuAC-GCG-GCC- -5' |
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10426 | 5' | -58.6 | NC_002687.1 | + | 181675 | 0.67 | 0.926051 |
Target: 5'- aUGCGAUGUGGacgCGCUCAcgacgaaaGCgGCCGa -3' miRNA: 3'- gGCGCUACGCCa--GCGAGUa-------CG-CGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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