miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10426 5' -58.6 NC_002687.1 + 39042 0.66 0.948139
Target:  5'- cCCGCGAagGCca-CGCUCAUGuCGCCc- -3'
miRNA:   3'- -GGCGCUa-CGccaGCGAGUAC-GCGGcc -5'
10426 5' -58.6 NC_002687.1 + 39664 0.69 0.855795
Target:  5'- aCCGCuGAUGUGGUcCGCgaugaaaaaccaccuUUGUGUGUCGGc -3'
miRNA:   3'- -GGCG-CUACGCCA-GCG---------------AGUACGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 47529 0.68 0.910388
Target:  5'- gCCuCGG-GCGG-CGCagAUGUGCCGGc -3'
miRNA:   3'- -GGcGCUaCGCCaGCGagUACGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 57339 0.7 0.822833
Target:  5'- uUCGCGG-GCGGU-GUcCGUGCGCCGc -3'
miRNA:   3'- -GGCGCUaCGCCAgCGaGUACGCGGCc -5'
10426 5' -58.6 NC_002687.1 + 71663 0.66 0.95559
Target:  5'- uUCGCGGguugagcacCGaGUCGCUaaGUGCGCUGGa -3'
miRNA:   3'- -GGCGCUac-------GC-CAGCGAg-UACGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 86948 0.66 0.943708
Target:  5'- gCGcCGGUGCgGGUC-CUCAUgcuaucaagaauaGCGCUGGc -3'
miRNA:   3'- gGC-GCUACG-CCAGcGAGUA-------------CGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 118168 0.76 0.516242
Target:  5'- gCUGCGGUGCaGUCGCagagcccgUAUGCGCCGu -3'
miRNA:   3'- -GGCGCUACGcCAGCGa-------GUACGCGGCc -5'
10426 5' -58.6 NC_002687.1 + 143602 0.67 0.921031
Target:  5'- cCCGgGAUGCacUCGCggaagUUGUGCGCCGa -3'
miRNA:   3'- -GGCgCUACGccAGCG-----AGUACGCGGCc -5'
10426 5' -58.6 NC_002687.1 + 154301 0.7 0.790403
Target:  5'- aCUGCGAccaaGCGGUCGCcaaguUCGUG-GCCGa -3'
miRNA:   3'- -GGCGCUa---CGCCAGCG-----AGUACgCGGCc -5'
10426 5' -58.6 NC_002687.1 + 181675 0.67 0.926051
Target:  5'- aUGCGAUGUGGacgCGCUCAcgacgaaaGCgGCCGa -3'
miRNA:   3'- gGCGCUACGCCa--GCGAGUa-------CG-CGGCc -5'
10426 5' -58.6 NC_002687.1 + 198671 0.68 0.880333
Target:  5'- gCCuCGAaGUGGgagCGCUCAUGCGCa-- -3'
miRNA:   3'- -GGcGCUaCGCCa--GCGAGUACGCGgcc -5'
10426 5' -58.6 NC_002687.1 + 199129 0.67 0.926051
Target:  5'- uCUGCGcgGCGucuaGCUCGUGUGUgGGc -3'
miRNA:   3'- -GGCGCuaCGCcag-CGAGUACGCGgCC- -5'
10426 5' -58.6 NC_002687.1 + 200244 0.66 0.962278
Target:  5'- aCCGCGcggcucuUGCGGU-GCUCaAUGUGaaGGu -3'
miRNA:   3'- -GGCGCu------ACGCCAgCGAG-UACGCggCC- -5'
10426 5' -58.6 NC_002687.1 + 209937 0.68 0.910388
Target:  5'- cCCGUGGUgGCGGUgGUgccgUAUGUGCCc- -3'
miRNA:   3'- -GGCGCUA-CGCCAgCGa---GUACGCGGcc -5'
10426 5' -58.6 NC_002687.1 + 209964 0.67 0.93087
Target:  5'- nCCGUGGUGcCGGUggugcagauggUGCcCGUgGUGCCGGu -3'
miRNA:   3'- -GGCGCUAC-GCCA-----------GCGaGUA-CGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 223484 0.66 0.95559
Target:  5'- uUCGgGAUGCGGUgGCgg--GgGCgGGg -3'
miRNA:   3'- -GGCgCUACGCCAgCGaguaCgCGgCC- -5'
10426 5' -58.6 NC_002687.1 + 224113 0.73 0.645963
Target:  5'- aCGCGGUGgCGGUgGCgcugGCGCUGGc -3'
miRNA:   3'- gGCGCUAC-GCCAgCGaguaCGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 224138 0.69 0.860044
Target:  5'- -nGCGGUGgCGGUgGCgcugGCGCUGGc -3'
miRNA:   3'- ggCGCUAC-GCCAgCGaguaCGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 230577 0.66 0.94412
Target:  5'- aUCGUGAUGCaGGUagcaCGCUgAggcGUGCUGGa -3'
miRNA:   3'- -GGCGCUACG-CCA----GCGAgUa--CGCGGCC- -5'
10426 5' -58.6 NC_002687.1 + 238667 0.69 0.838196
Target:  5'- uCCGCcAUGCGGaUCGUUCGgUGgGCCa- -3'
miRNA:   3'- -GGCGcUACGCC-AGCGAGU-ACgCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.