miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 3' -61.9 NC_002687.1 + 18008 0.68 0.698345
Target:  5'- aGCCGcUGCGGCcGCaaCGCUUGGaGCGg -3'
miRNA:   3'- -UGGUaACGCCGcCGccGCGAACC-CGC- -5'
10434 3' -61.9 NC_002687.1 + 34734 0.66 0.830863
Target:  5'- aGCCAUUGCGucauacaauagguuaGCGGCGGCGUcaaccuUUGucuggucguaaGGCu -3'
miRNA:   3'- -UGGUAACGC---------------CGCCGCCGCG------AAC-----------CCGc -5'
10434 3' -61.9 NC_002687.1 + 48973 0.71 0.548852
Target:  5'- ----aUGUGGCGGCGuGCGC--GGGCGu -3'
miRNA:   3'- ugguaACGCCGCCGC-CGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 63954 0.74 0.402668
Target:  5'- aACCAUUGCGGUGuucuacuuGUGGCGUUUGuGCGa -3'
miRNA:   3'- -UGGUAACGCCGC--------CGCCGCGAACcCGC- -5'
10434 3' -61.9 NC_002687.1 + 69040 0.69 0.632855
Target:  5'- gGCgAUggugGCGGCGGUGGCGgUggugucGGCGg -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAac----CCGC- -5'
10434 3' -61.9 NC_002687.1 + 72556 0.71 0.530583
Target:  5'- gGCgGUgugucgGCGGCGGCGGCGUc--GGCa -3'
miRNA:   3'- -UGgUAa-----CGCCGCCGCCGCGaacCCGc -5'
10434 3' -61.9 NC_002687.1 + 78103 0.68 0.734883
Target:  5'- gGCC---GUGGCGGCGGCGUcUGaaacGGCa -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCGCGaAC----CCGc -5'
10434 3' -61.9 NC_002687.1 + 80619 0.67 0.770213
Target:  5'- uGCCAUgGCGGUGGUcgcgGGCGUuugccUUGGGa- -3'
miRNA:   3'- -UGGUAaCGCCGCCG----CCGCG-----AACCCgc -5'
10434 3' -61.9 NC_002687.1 + 103680 0.68 0.743846
Target:  5'- uCUGUUGcCGGUGGCGaaaGCUuucUGGGCGa -3'
miRNA:   3'- uGGUAAC-GCCGCCGCcg-CGA---ACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 107270 0.67 0.787283
Target:  5'- gUCAUUGCGGCGGCcuucGCGUcagcacGGGUa -3'
miRNA:   3'- uGGUAACGCCGCCGc---CGCGaa----CCCGc -5'
10434 3' -61.9 NC_002687.1 + 119440 0.66 0.835448
Target:  5'- cACCGUUGCGGUGGaGGCGU--GGa-- -3'
miRNA:   3'- -UGGUAACGCCGCCgCCGCGaaCCcgc -5'
10434 3' -61.9 NC_002687.1 + 130723 0.66 0.827776
Target:  5'- gGCgGUgGUGGUGGUGGCGgUggcgGuGGCGa -3'
miRNA:   3'- -UGgUAaCGCCGCCGCCGCgAa---C-CCGC- -5'
10434 3' -61.9 NC_002687.1 + 145327 0.69 0.679766
Target:  5'- cACCGagGUGGCugacgcggacaaGGCGGCGUacUGGGUGa -3'
miRNA:   3'- -UGGUaaCGCCG------------CCGCCGCGa-ACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 159320 0.67 0.761519
Target:  5'- uCCGUUGUcgGGCGcGUGGaaccCUUGGGCGu -3'
miRNA:   3'- uGGUAACG--CCGC-CGCCgc--GAACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 160316 0.66 0.819953
Target:  5'- gGCCuugGCGGCGGCuGC-CUUGGcCGc -3'
miRNA:   3'- -UGGuaaCGCCGCCGcCGcGAACCcGC- -5'
10434 3' -61.9 NC_002687.1 + 173584 0.66 0.827776
Target:  5'- gGCgGagGCGGaGGCGGagGCggGGGCGg -3'
miRNA:   3'- -UGgUaaCGCCgCCGCCg-CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 212353 0.66 0.819953
Target:  5'- cACCGUcgacaGCGGUGGUGGCaGuCUUGGuCGa -3'
miRNA:   3'- -UGGUAa----CGCCGCCGCCG-C-GAACCcGC- -5'
10434 3' -61.9 NC_002687.1 + 224134 0.73 0.434923
Target:  5'- cGCUGgcgGUGGCGGUGGCGCU--GGCGc -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCGCGAacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 224164 0.71 0.530583
Target:  5'- cGCUg--GCGGUGGCGGUGgCggGGGCa -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCGC-GaaCCCGc -5'
10434 3' -61.9 NC_002687.1 + 224198 0.69 0.670423
Target:  5'- gGCgGUggcgGUGGCGGUGGCGgUggcgGuGGCGa -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAa---C-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.