miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 3' -61.9 NC_002687.1 + 226810 0.73 0.460071
Target:  5'- uGCCGgugGCGGUGGCGGUgGCgguGGCGg -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCG-CGaacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 291572 0.66 0.835448
Target:  5'- uGCCGUUGgGGCuGUGGUcaucuuuucuGCUUccGGGCa -3'
miRNA:   3'- -UGGUAACgCCGcCGCCG----------CGAA--CCCGc -5'
10434 3' -61.9 NC_002687.1 + 280962 0.66 0.842964
Target:  5'- gGCCugggugGCGGCaGCGGCGgCcgGGGUu -3'
miRNA:   3'- -UGGuaa---CGCCGcCGCCGC-GaaCCCGc -5'
10434 3' -61.9 NC_002687.1 + 283583 0.66 0.842964
Target:  5'- uGCCAaacaGC-GUGGUGaaGCGCUUGGGCu -3'
miRNA:   3'- -UGGUaa--CGcCGCCGC--CGCGAACCCGc -5'
10434 3' -61.9 NC_002687.1 + 69040 0.69 0.632855
Target:  5'- gGCgAUggugGCGGCGGUGGCGgUggugucGGCGg -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAac----CCGC- -5'
10434 3' -61.9 NC_002687.1 + 224198 0.69 0.670423
Target:  5'- gGCgGUggcgGUGGCGGUGGCGgUggcgGuGGCGa -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAa---C-CCGC- -5'
10434 3' -61.9 NC_002687.1 + 225012 0.67 0.761519
Target:  5'- aGCUGgaGCgGGUGGUGGCGU--GGGCGu -3'
miRNA:   3'- -UGGUaaCG-CCGCCGCCGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 80619 0.67 0.770213
Target:  5'- uGCCAUgGCGGUGGUcgcgGGCGUuugccUUGGGa- -3'
miRNA:   3'- -UGGUAaCGCCGCCG----CCGCG-----AACCCgc -5'
10434 3' -61.9 NC_002687.1 + 281781 0.66 0.803881
Target:  5'- cCCGUUGCgcgugugggaacGGCGGgGGCagggGCcgGGGCGc -3'
miRNA:   3'- uGGUAACG------------CCGCCgCCG----CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 225584 0.66 0.811986
Target:  5'- gGCCGgaGCgGGgGGUGGUGCUggagacGGCGg -3'
miRNA:   3'- -UGGUaaCG-CCgCCGCCGCGAac----CCGC- -5'
10434 3' -61.9 NC_002687.1 + 225489 0.67 0.793149
Target:  5'- aGCUuacGCGGCGGCGGCgGCggaacguaagaggaaGGGUGc -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCG-CGaa-------------CCCGC- -5'
10434 3' -61.9 NC_002687.1 + 72556 0.71 0.530583
Target:  5'- gGCgGUgugucgGCGGCGGCGGCGUc--GGCa -3'
miRNA:   3'- -UGgUAa-----CGCCGCCGCCGCGaacCCGc -5'
10434 3' -61.9 NC_002687.1 + 212353 0.66 0.819953
Target:  5'- cACCGUcgacaGCGGUGGUGGCaGuCUUGGuCGa -3'
miRNA:   3'- -UGGUAa----CGCCGCCGCCG-C-GAACCcGC- -5'
10434 3' -61.9 NC_002687.1 + 224164 0.71 0.530583
Target:  5'- cGCUg--GCGGUGGCGGUGgCggGGGCa -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCGC-GaaCCCGc -5'
10434 3' -61.9 NC_002687.1 + 107270 0.67 0.787283
Target:  5'- gUCAUUGCGGCGGCcuucGCGUcagcacGGGUa -3'
miRNA:   3'- uGGUAACGCCGCCGc---CGCGaa----CCCGc -5'
10434 3' -61.9 NC_002687.1 + 173584 0.66 0.827776
Target:  5'- gGCgGagGCGGaGGCGGagGCggGGGCGg -3'
miRNA:   3'- -UGgUaaCGCCgCCGCCg-CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 278941 0.66 0.842964
Target:  5'- cACCuuuaucgGUGGUGGCaGCGCagggggGGGCa -3'
miRNA:   3'- -UGGuaa----CGCCGCCGcCGCGaa----CCCGc -5'
10434 3' -61.9 NC_002687.1 + 48973 0.71 0.548852
Target:  5'- ----aUGUGGCGGCGuGCGC--GGGCGu -3'
miRNA:   3'- ugguaACGCCGCCGC-CGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 145327 0.69 0.679766
Target:  5'- cACCGagGUGGCugacgcggacaaGGCGGCGUacUGGGUGa -3'
miRNA:   3'- -UGGUaaCGCCG------------CCGCCGCGa-ACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 224134 0.73 0.434923
Target:  5'- cGCUGgcgGUGGCGGUGGCGCU--GGCGc -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCGCGAacCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.