miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 5' -57.9 NC_002687.1 + 208779 0.67 0.922598
Target:  5'- uUGgGGUcguUCucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- -ACgCCGu--AGua-C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 208958 0.69 0.86767
Target:  5'- -uUGGUGUCGUucucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- acGCCGUAGUA-----C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 209492 0.67 0.922598
Target:  5'- cGCGGCAUCuucGGCCGCgCGUCcUCa- -3'
miRNA:   3'- aCGCCGUAGua-CUGGUG-GCGGcAGca -5'
10434 5' -57.9 NC_002687.1 + 212334 0.66 0.945846
Target:  5'- -uCGGCGUCuucgGGCuCGCCaCCGUCGa -3'
miRNA:   3'- acGCCGUAGua--CUG-GUGGcGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 215690 0.67 0.929638
Target:  5'- gGCGGuCgucguaaugucacugGUCGUGGCCGucacugUCGCCGUCGc -3'
miRNA:   3'- aCGCC-G---------------UAGUACUGGU------GGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 235039 0.67 0.915692
Target:  5'- gGCGuCAUCGgccuguccucauuuUGAUCAUCGCCGUCa- -3'
miRNA:   3'- aCGCcGUAGU--------------ACUGGUGGCGGCAGca -5'
10434 5' -57.9 NC_002687.1 + 238888 0.67 0.922598
Target:  5'- aGCGGUucugaaCAUGGCCuuCCGCCcUCGa -3'
miRNA:   3'- aCGCCGua----GUACUGGu-GGCGGcAGCa -5'
10434 5' -57.9 NC_002687.1 + 239184 0.7 0.806192
Target:  5'- aUGUGGCcuuuAUCAUGGCCACCGaguaCGacuUCGg -3'
miRNA:   3'- -ACGCCG----UAGUACUGGUGGCg---GC---AGCa -5'
10434 5' -57.9 NC_002687.1 + 240052 0.66 0.956243
Target:  5'- gGCGGCGUCugGACCGugcuggucguacacCCGCCGcuuagCGg -3'
miRNA:   3'- aCGCCGUAGuaCUGGU--------------GGCGGCa----GCa -5'
10434 5' -57.9 NC_002687.1 + 249545 0.66 0.95369
Target:  5'- cGgGGCGUCGgacgGAgaaagaagcguCCaAUCGCCGUCGg -3'
miRNA:   3'- aCgCCGUAGUa---CU-----------GG-UGGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 291662 0.66 0.95369
Target:  5'- cGCGGCcgC-UGGgCACCGCgCGagGUa -3'
miRNA:   3'- aCGCCGuaGuACUgGUGGCG-GCagCA- -5'
10434 5' -57.9 NC_002687.1 + 292305 0.66 0.95369
Target:  5'- cGCGGCcgcuuUCGUGcccaaaACCACCGCCa---- -3'
miRNA:   3'- aCGCCGu----AGUAC------UGGUGGCGGcagca -5'
10434 5' -57.9 NC_002687.1 + 305860 0.66 0.956243
Target:  5'- cUGUGGCAgCAuguUGGCuCACCgugucaaacgguaaGCCGUCGa -3'
miRNA:   3'- -ACGCCGUaGU---ACUG-GUGG--------------CGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 313018 0.72 0.698556
Target:  5'- uUGuCGGCucgCGUGACCACUGCCGa--- -3'
miRNA:   3'- -AC-GCCGua-GUACUGGUGGCGGCagca -5'
10434 5' -57.9 NC_002687.1 + 313376 0.66 0.957308
Target:  5'- gGcCGGUcgCGUGACCGCgGUCGagGa -3'
miRNA:   3'- aC-GCCGuaGUACUGGUGgCGGCagCa -5'
10434 5' -57.9 NC_002687.1 + 327457 0.67 0.937177
Target:  5'- aGUGGCAcaucaUCAUcAUCAUCGCCG-CGUa -3'
miRNA:   3'- aCGCCGU-----AGUAcUGGUGGCGGCaGCA- -5'
10434 5' -57.9 NC_002687.1 + 329721 0.66 0.945846
Target:  5'- cGCcGaaacaGUCGUaGAcCCGCUGCCGUCGUa -3'
miRNA:   3'- aCGcCg----UAGUA-CU-GGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 330569 0.69 0.860583
Target:  5'- gGUGGCGUgcaCAUG-CCGgCaGCCGUCGUg -3'
miRNA:   3'- aCGCCGUA---GUACuGGUgG-CGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 332230 1.07 0.00642
Target:  5'- uUGCGGCAUCAUGACCACCGCCGUCGUu -3'
miRNA:   3'- -ACGCCGUAGUACUGGUGGCGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.