Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10434 | 5' | -57.9 | NC_002687.1 | + | 10538 | 0.67 | 0.922598 |
Target: 5'- cGCGGaCGUUcucgcucgGGCgAUCGCCGUCGg -3' miRNA: 3'- aCGCC-GUAGua------CUGgUGGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 57345 | 0.67 | 0.927669 |
Target: 5'- gGCGGUGUCc-GugCGCCGCCGa--- -3' miRNA: 3'- aCGCCGUAGuaCugGUGGCGGCagca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 61397 | 0.69 | 0.838251 |
Target: 5'- aUGCGGCAgacgucuuUCAUG-CCGuuGCCGUUc- -3' miRNA: 3'- -ACGCCGU--------AGUACuGGUggCGGCAGca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 61854 | 0.72 | 0.717341 |
Target: 5'- cGaCGGCGUCAaGAUUACCGucCCGUCGg -3' miRNA: 3'- aC-GCCGUAGUaCUGGUGGC--GGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 65218 | 0.66 | 0.94987 |
Target: 5'- -aCGGCAUCAUGuGCCGCCcacaaagcaGCCaaaaGUCGa -3' miRNA: 3'- acGCCGUAGUAC-UGGUGG---------CGG----CAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 65570 | 0.68 | 0.887792 |
Target: 5'- gGCGGCA-CAUGA-UGCCguGCCGUCGc -3' miRNA: 3'- aCGCCGUaGUACUgGUGG--CGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 81469 | 0.66 | 0.95369 |
Target: 5'- gUGUGGCcgccucGUCAUcACCAuucccguugUCGCCGUCGg -3' miRNA: 3'- -ACGCCG------UAGUAcUGGU---------GGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 84694 | 0.71 | 0.763047 |
Target: 5'- uUGCGGCGgacucaGUGAUCgucaugGCCGUCGUCGg -3' miRNA: 3'- -ACGCCGUag----UACUGG------UGGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 90038 | 0.66 | 0.941616 |
Target: 5'- -aCGGCAUcCAUGAUCGCgGCCuccGUUGUc -3' miRNA: 3'- acGCCGUA-GUACUGGUGgCGG---CAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 94349 | 0.66 | 0.945846 |
Target: 5'- gGCGGUGUCAUGAgucuCUACUGCgGcuUCGg -3' miRNA: 3'- aCGCCGUAGUACU----GGUGGCGgC--AGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 105091 | 0.67 | 0.937177 |
Target: 5'- -aCGGCggCGUGGCCACCcacguacUCGUCGUc -3' miRNA: 3'- acGCCGuaGUACUGGUGGc------GGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 106309 | 0.69 | 0.845868 |
Target: 5'- aGuCGGCAUCAUcAUCGuuGUCGUCGg -3' miRNA: 3'- aC-GCCGUAGUAcUGGUggCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 114086 | 0.68 | 0.887792 |
Target: 5'- cUGCGGCAgCGguaAUCGCgguCGCCGUCGUg -3' miRNA: 3'- -ACGCCGUaGUac-UGGUG---GCGGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 158807 | 0.7 | 0.797813 |
Target: 5'- gGCGGCGaCAacgacgGACCGCCGUCGcCGc -3' miRNA: 3'- aCGCCGUaGUa-----CUGGUGGCGGCaGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 159164 | 0.66 | 0.945846 |
Target: 5'- gGCGGUccGUCGUugUCGCCGCCGUg-- -3' miRNA: 3'- aCGCCG--UAGUAcuGGUGGCGGCAgca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 166311 | 0.66 | 0.95369 |
Target: 5'- -uCGGagcuUAUCuUGGCCGCCGCCG-CGUu -3' miRNA: 3'- acGCC----GUAGuACUGGUGGCGGCaGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 168894 | 0.66 | 0.94987 |
Target: 5'- cGUGGCccgCAUGGCCGaagacaUgGCCGUUGUc -3' miRNA: 3'- aCGCCGua-GUACUGGU------GgCGGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 184445 | 0.69 | 0.845868 |
Target: 5'- cGCGacccCGUCGUGACCuACCGCCGcCu- -3' miRNA: 3'- aCGCc---GUAGUACUGG-UGGCGGCaGca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 200115 | 0.66 | 0.94987 |
Target: 5'- gUGcCGGCGaCGacGGCCGCgCGCCGUUGa -3' miRNA: 3'- -AC-GCCGUaGUa-CUGGUG-GCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 208632 | 0.67 | 0.922598 |
Target: 5'- uUGgGGUcguUCucgGcACCACCGUCGUCGUc -3' miRNA: 3'- -ACgCCGu--AGua-C-UGGUGGCGGCAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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