miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 5' -57.9 NC_002687.1 + 332230 1.07 0.00642
Target:  5'- uUGCGGCAUCAUGACCACCGCCGUCGUu -3'
miRNA:   3'- -ACGCCGUAGUACUGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 313018 0.72 0.698556
Target:  5'- uUGuCGGCucgCGUGACCACUGCCGa--- -3'
miRNA:   3'- -AC-GCCGua-GUACUGGUGGCGGCagca -5'
10434 5' -57.9 NC_002687.1 + 61854 0.72 0.717341
Target:  5'- cGaCGGCGUCAaGAUUACCGucCCGUCGg -3'
miRNA:   3'- aC-GCCGUAGUaCUGGUGGC--GGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 84694 0.71 0.763047
Target:  5'- uUGCGGCGgacucaGUGAUCgucaugGCCGUCGUCGg -3'
miRNA:   3'- -ACGCCGUag----UACUGG------UGGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 158807 0.7 0.797813
Target:  5'- gGCGGCGaCAacgacgGACCGCCGUCGcCGc -3'
miRNA:   3'- aCGCCGUaGUa-----CUGGUGGCGGCaGCa -5'
10434 5' -57.9 NC_002687.1 + 239184 0.7 0.806192
Target:  5'- aUGUGGCcuuuAUCAUGGCCACCGaguaCGacuUCGg -3'
miRNA:   3'- -ACGCCG----UAGUACUGGUGGCg---GC---AGCa -5'
10434 5' -57.9 NC_002687.1 + 61397 0.69 0.838251
Target:  5'- aUGCGGCAgacgucuuUCAUG-CCGuuGCCGUUc- -3'
miRNA:   3'- -ACGCCGU--------AGUACuGGUggCGGCAGca -5'
10434 5' -57.9 NC_002687.1 + 106309 0.69 0.845868
Target:  5'- aGuCGGCAUCAUcAUCGuuGUCGUCGg -3'
miRNA:   3'- aC-GCCGUAGUAcUGGUggCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 184445 0.69 0.845868
Target:  5'- cGCGacccCGUCGUGACCuACCGCCGcCu- -3'
miRNA:   3'- aCGCc---GUAGUACUGG-UGGCGGCaGca -5'
10434 5' -57.9 NC_002687.1 + 330569 0.69 0.860583
Target:  5'- gGUGGCGUgcaCAUG-CCGgCaGCCGUCGUg -3'
miRNA:   3'- aCGCCGUA---GUACuGGUgG-CGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 208958 0.69 0.86767
Target:  5'- -uUGGUGUCGUucucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- acGCCGUAGUA-----C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 114086 0.68 0.887792
Target:  5'- cUGCGGCAgCGguaAUCGCgguCGCCGUCGUg -3'
miRNA:   3'- -ACGCCGUaGUac-UGGUG---GCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 65570 0.68 0.887792
Target:  5'- gGCGGCA-CAUGA-UGCCguGCCGUCGc -3'
miRNA:   3'- aCGCCGUaGUACUgGUGG--CGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 235039 0.67 0.915692
Target:  5'- gGCGuCAUCGgccuguccucauuuUGAUCAUCGCCGUCa- -3'
miRNA:   3'- aCGCcGUAGU--------------ACUGGUGGCGGCAGca -5'
10434 5' -57.9 NC_002687.1 + 238888 0.67 0.922598
Target:  5'- aGCGGUucugaaCAUGGCCuuCCGCCcUCGa -3'
miRNA:   3'- aCGCCGua----GUACUGGu-GGCGGcAGCa -5'
10434 5' -57.9 NC_002687.1 + 208779 0.67 0.922598
Target:  5'- uUGgGGUcguUCucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- -ACgCCGu--AGua-C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 209492 0.67 0.922598
Target:  5'- cGCGGCAUCuucGGCCGCgCGUCcUCa- -3'
miRNA:   3'- aCGCCGUAGua-CUGGUG-GCGGcAGca -5'
10434 5' -57.9 NC_002687.1 + 10538 0.67 0.922598
Target:  5'- cGCGGaCGUUcucgcucgGGCgAUCGCCGUCGg -3'
miRNA:   3'- aCGCC-GUAGua------CUGgUGGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 208632 0.67 0.922598
Target:  5'- uUGgGGUcguUCucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- -ACgCCGu--AGua-C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 57345 0.67 0.927669
Target:  5'- gGCGGUGUCc-GugCGCCGCCGa--- -3'
miRNA:   3'- aCGCCGUAGuaCugGUGGCGGCagca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.