miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 5' -57.9 NC_002687.1 + 158807 0.7 0.797813
Target:  5'- gGCGGCGaCAacgacgGACCGCCGUCGcCGc -3'
miRNA:   3'- aCGCCGUaGUa-----CUGGUGGCGGCaGCa -5'
10434 5' -57.9 NC_002687.1 + 200115 0.66 0.94987
Target:  5'- gUGcCGGCGaCGacGGCCGCgCGCCGUUGa -3'
miRNA:   3'- -AC-GCCGUaGUa-CUGGUG-GCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 329721 0.66 0.945846
Target:  5'- cGCcGaaacaGUCGUaGAcCCGCUGCCGUCGUa -3'
miRNA:   3'- aCGcCg----UAGUA-CU-GGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 212334 0.66 0.945846
Target:  5'- -uCGGCGUCuucgGGCuCGCCaCCGUCGa -3'
miRNA:   3'- acGCCGUAGua--CUG-GUGGcGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 327457 0.67 0.937177
Target:  5'- aGUGGCAcaucaUCAUcAUCAUCGCCG-CGUa -3'
miRNA:   3'- aCGCCGU-----AGUAcUGGUGGCGGCaGCA- -5'
10434 5' -57.9 NC_002687.1 + 57345 0.67 0.927669
Target:  5'- gGCGGUGUCc-GugCGCCGCCGa--- -3'
miRNA:   3'- aCGCCGUAGuaCugGUGGCGGCagca -5'
10434 5' -57.9 NC_002687.1 + 292305 0.66 0.95369
Target:  5'- cGCGGCcgcuuUCGUGcccaaaACCACCGCCa---- -3'
miRNA:   3'- aCGCCGu----AGUAC------UGGUGGCGGcagca -5'
10434 5' -57.9 NC_002687.1 + 168894 0.66 0.94987
Target:  5'- cGUGGCccgCAUGGCCGaagacaUgGCCGUUGUc -3'
miRNA:   3'- aCGCCGua-GUACUGGU------GgCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 94349 0.66 0.945846
Target:  5'- gGCGGUGUCAUGAgucuCUACUGCgGcuUCGg -3'
miRNA:   3'- aCGCCGUAGUACU----GGUGGCGgC--AGCa -5'
10434 5' -57.9 NC_002687.1 + 10538 0.67 0.922598
Target:  5'- cGCGGaCGUUcucgcucgGGCgAUCGCCGUCGg -3'
miRNA:   3'- aCGCC-GUAGua------CUGgUGGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 239184 0.7 0.806192
Target:  5'- aUGUGGCcuuuAUCAUGGCCACCGaguaCGacuUCGg -3'
miRNA:   3'- -ACGCCG----UAGUACUGGUGGCg---GC---AGCa -5'
10434 5' -57.9 NC_002687.1 + 305860 0.66 0.956243
Target:  5'- cUGUGGCAgCAuguUGGCuCACCgugucaaacgguaaGCCGUCGa -3'
miRNA:   3'- -ACGCCGUaGU---ACUG-GUGG--------------CGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 330569 0.69 0.860583
Target:  5'- gGUGGCGUgcaCAUG-CCGgCaGCCGUCGUg -3'
miRNA:   3'- aCGCCGUA---GUACuGGUgG-CGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 65218 0.66 0.94987
Target:  5'- -aCGGCAUCAUGuGCCGCCcacaaagcaGCCaaaaGUCGa -3'
miRNA:   3'- acGCCGUAGUAC-UGGUGG---------CGG----CAGCa -5'
10434 5' -57.9 NC_002687.1 + 81469 0.66 0.95369
Target:  5'- gUGUGGCcgccucGUCAUcACCAuucccguugUCGCCGUCGg -3'
miRNA:   3'- -ACGCCG------UAGUAcUGGU---------GGCGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 65570 0.68 0.887792
Target:  5'- gGCGGCA-CAUGA-UGCCguGCCGUCGc -3'
miRNA:   3'- aCGCCGUaGUACUgGUGG--CGGCAGCa -5'
10434 5' -57.9 NC_002687.1 + 235039 0.67 0.915692
Target:  5'- gGCGuCAUCGgccuguccucauuuUGAUCAUCGCCGUCa- -3'
miRNA:   3'- aCGCcGUAGU--------------ACUGGUGGCGGCAGca -5'
10434 5' -57.9 NC_002687.1 + 238888 0.67 0.922598
Target:  5'- aGCGGUucugaaCAUGGCCuuCCGCCcUCGa -3'
miRNA:   3'- aCGCCGua----GUACUGGu-GGCGGcAGCa -5'
10434 5' -57.9 NC_002687.1 + 208779 0.67 0.922598
Target:  5'- uUGgGGUcguUCucgGcACCACCGUCGUCGUc -3'
miRNA:   3'- -ACgCCGu--AGua-C-UGGUGGCGGCAGCA- -5'
10434 5' -57.9 NC_002687.1 + 90038 0.66 0.941616
Target:  5'- -aCGGCAUcCAUGAUCGCgGCCuccGUUGUc -3'
miRNA:   3'- acGCCGUA-GUACUGGUGgCGG---CAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.