miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10450 5' -45.2 NC_002687.1 + 305891 0.66 1
Target:  5'- ---aGAGGAGCG-CCGAGGuuAA-CGg -3'
miRNA:   3'- aaaaUUCCUUGCaGGUUCCugUUaGC- -5'
10450 5' -45.2 NC_002687.1 + 113628 0.68 1
Target:  5'- -----cGGGcacGCGUCCAAGGcguuuGCAAUCu -3'
miRNA:   3'- aaaauuCCU---UGCAGGUUCC-----UGUUAGc -5'
10450 5' -45.2 NC_002687.1 + 93295 0.66 1
Target:  5'- ---gGAGGAGCGuauUCCccGGGCGAUUa -3'
miRNA:   3'- aaaaUUCCUUGC---AGGuuCCUGUUAGc -5'
10450 5' -45.2 NC_002687.1 + 34317 0.66 1
Target:  5'- aUUUGcGGGAUGUCCAAGaGACu---- -3'
miRNA:   3'- aAAAUuCCUUGCAGGUUC-CUGuuagc -5'
10450 5' -45.2 NC_002687.1 + 208295 0.66 1
Target:  5'- ---cAAGG-ACGU-CAAGGACGAUgGa -3'
miRNA:   3'- aaaaUUCCuUGCAgGUUCCUGUUAgC- -5'
10450 5' -45.2 NC_002687.1 + 208442 0.66 1
Target:  5'- ---cAAGG-ACGU-CAAGGACGAUgGa -3'
miRNA:   3'- aaaaUUCCuUGCAgGUUCCUGUUAgC- -5'
10450 5' -45.2 NC_002687.1 + 13212 0.66 1
Target:  5'- --gUGAGGAACGUgUGcAGGGCAAg-- -3'
miRNA:   3'- aaaAUUCCUUGCAgGU-UCCUGUUagc -5'
10450 5' -45.2 NC_002687.1 + 159273 0.67 1
Target:  5'- -cUUGGGGAGCGUUagagGAGGGCAc--- -3'
miRNA:   3'- aaAAUUCCUUGCAGg---UUCCUGUuagc -5'
10450 5' -45.2 NC_002687.1 + 85396 0.67 1
Target:  5'- ---cGGGGGACGgcaaaUCCAAGGGCGc--- -3'
miRNA:   3'- aaaaUUCCUUGC-----AGGUUCCUGUuagc -5'
10450 5' -45.2 NC_002687.1 + 316355 0.66 1
Target:  5'- -----cGGAACGacugCCGAGGACAc--- -3'
miRNA:   3'- aaaauuCCUUGCa---GGUUCCUGUuagc -5'
10450 5' -45.2 NC_002687.1 + 151213 0.67 1
Target:  5'- -cUUGGGGAAUGUCCAgcAGGGUAccagguagaccacAUCGa -3'
miRNA:   3'- aaAAUUCCUUGCAGGU--UCCUGU-------------UAGC- -5'
10450 5' -45.2 NC_002687.1 + 97524 0.67 1
Target:  5'- ---cGGGGAGCGUUUuccGGGGC-GUCGg -3'
miRNA:   3'- aaaaUUCCUUGCAGGu--UCCUGuUAGC- -5'
10450 5' -45.2 NC_002687.1 + 4770 0.67 1
Target:  5'- -----cGGAGCGUCgauggGAGGGCAAcUCGa -3'
miRNA:   3'- aaaauuCCUUGCAGg----UUCCUGUU-AGC- -5'
10450 5' -45.2 NC_002687.1 + 176534 0.66 1
Target:  5'- --cUGAGGAGauccUCCAccacAGGugGAUCGa -3'
miRNA:   3'- aaaAUUCCUUgc--AGGU----UCCugUUAGC- -5'
10450 5' -45.2 NC_002687.1 + 45107 0.66 1
Target:  5'- -cUUGAGGccgucgGUCCAacGGGACAuaGUCGa -3'
miRNA:   3'- aaAAUUCCuug---CAGGU--UCCUGU--UAGC- -5'
10450 5' -45.2 NC_002687.1 + 150365 0.68 0.999999
Target:  5'- -----cGGGACGUUCAAGGcUAAUCc -3'
miRNA:   3'- aaaauuCCUUGCAGGUUCCuGUUAGc -5'
10450 5' -45.2 NC_002687.1 + 64299 0.69 0.999997
Target:  5'- ---gAAGGAagacuGCGUgCuuAGGACGGUCGg -3'
miRNA:   3'- aaaaUUCCU-----UGCAgGu-UCCUGUUAGC- -5'
10450 5' -45.2 NC_002687.1 + 33527 0.69 0.999991
Target:  5'- --aUGAGGGGCGggacgCCAGGGAUAc--- -3'
miRNA:   3'- aaaAUUCCUUGCa----GGUUCCUGUuagc -5'
10450 5' -45.2 NC_002687.1 + 97451 0.7 0.999982
Target:  5'- --gUAGGGAGCGuuugccauucgcaUCCAAGGuuucucgcugACGGUCGg -3'
miRNA:   3'- aaaAUUCCUUGC-------------AGGUUCC----------UGUUAGC- -5'
10450 5' -45.2 NC_002687.1 + 74952 0.72 0.999834
Target:  5'- --gUGAGGcACGuuUCCAAGGACAuUCu -3'
miRNA:   3'- aaaAUUCCuUGC--AGGUUCCUGUuAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.