Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10468 | 5' | -55 | NC_002687.1 | + | 7702 | 0.66 | 0.989693 |
Target: 5'- -uCUCGAUCCgucgUUGUUCcaguUGCaCACAAGCg -3' miRNA: 3'- ccGAGCUGGG----GACAAG----ACG-GUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 8813 | 0.68 | 0.964045 |
Target: 5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3' miRNA: 3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 9074 | 0.68 | 0.964045 |
Target: 5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3' miRNA: 3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 11277 | 0.66 | 0.986938 |
Target: 5'- gGGgUCGGCacaacuCCCgugGUUUUGCCGauCGGGCg -3' miRNA: 3'- -CCgAGCUG------GGGa--CAAGACGGU--GUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 17804 | 0.66 | 0.989693 |
Target: 5'- aGCUCGGCCuCUUGaagCaGCCGCugcGGCu -3' miRNA: 3'- cCGAGCUGG-GGACaa-GaCGGUGu--UCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 18863 | 0.66 | 0.990888 |
Target: 5'- gGGCgcggUGGCCuCCUucugCUGCUACAggAGCa -3' miRNA: 3'- -CCGa---GCUGG-GGAcaa-GACGGUGU--UCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 48309 | 0.69 | 0.953607 |
Target: 5'- uGGCUCGAUCUuucuUUGUUCUGCUAUu--- -3' miRNA: 3'- -CCGAGCUGGG----GACAAGACGGUGuucg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 55216 | 0.71 | 0.892686 |
Target: 5'- aGGCcaUCGACUaCUGUUCgucgGCCGCcauGGCa -3' miRNA: 3'- -CCG--AGCUGGgGACAAGa---CGGUGu--UCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 64596 | 1.14 | 0.003778 |
Target: 5'- gGGCUCGACCCCUGUUCUGCCACAAGCa -3' miRNA: 3'- -CCGAGCUGGGGACAAGACGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 64922 | 0.67 | 0.981786 |
Target: 5'- -cCUCGACCCCaaa--UGCCuCGAGCc -3' miRNA: 3'- ccGAGCUGGGGacaagACGGuGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 85901 | 0.69 | 0.939959 |
Target: 5'- -cCUCGGCUCCUGgagggccacguggucCUGCCGCGccGGCg -3' miRNA: 3'- ccGAGCUGGGGACaa-------------GACGGUGU--UCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 87752 | 0.69 | 0.953607 |
Target: 5'- -aCUCGGCCUCUGguagacgggCUGCU-CAAGCg -3' miRNA: 3'- ccGAGCUGGGGACaa-------GACGGuGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 89260 | 0.7 | 0.932014 |
Target: 5'- aGCUaggGGCUCCUGcUCUGC-ACGAGCu -3' miRNA: 3'- cCGAg--CUGGGGACaAGACGgUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 105876 | 0.74 | 0.76748 |
Target: 5'- aGCUCG-CUCUUGUUCUGUacgGCGAGCu -3' miRNA: 3'- cCGAGCuGGGGACAAGACGg--UGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 106790 | 0.67 | 0.977588 |
Target: 5'- aGGuCUUGAUCCCcGUUUuaggggucgugaUGUCAUAGGCg -3' miRNA: 3'- -CC-GAGCUGGGGaCAAG------------ACGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 108282 | 0.66 | 0.985364 |
Target: 5'- aGGCUCGcUCCUUG-UCgGUCACGGGa -3' miRNA: 3'- -CCGAGCuGGGGACaAGaCGGUGUUCg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 121471 | 0.7 | 0.927047 |
Target: 5'- aGGCUuggugaccCGugCCCggauuccgaggGUUCcGCCACGGGCc -3' miRNA: 3'- -CCGA--------GCugGGGa----------CAAGaCGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 125471 | 0.65 | 0.991971 |
Target: 5'- aGGaCUUGGCgCa----CUGCCACGAGCa -3' miRNA: 3'- -CC-GAGCUGgGgacaaGACGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 141016 | 0.7 | 0.910836 |
Target: 5'- cGGCUCGAgUCgUUGUcgucaaaggccUCUGCCACAaugauaGGCa -3' miRNA: 3'- -CCGAGCUgGG-GACA-----------AGACGGUGU------UCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 159365 | 0.67 | 0.975241 |
Target: 5'- uGCUCGGCCCuCUccaggaUGgCACAAGCc -3' miRNA: 3'- cCGAGCUGGG-GAcaag--ACgGUGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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