miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10468 5' -55 NC_002687.1 + 168495 0.74 0.75841
Target:  5'- aGGCcaUGACCCUUGUUUcgGCCaaGCAAGCa -3'
miRNA:   3'- -CCGa-GCUGGGGACAAGa-CGG--UGUUCG- -5'
10468 5' -55 NC_002687.1 + 236381 0.67 0.977361
Target:  5'- cGCUCGAgCgauguacaUGUUCUGCCggcguucGCGAGCg -3'
miRNA:   3'- cCGAGCUgGgg------ACAAGACGG-------UGUUCG- -5'
10468 5' -55 NC_002687.1 + 180230 0.67 0.981786
Target:  5'- aGCUCGACCCCgcgcacgccuuUGUgagaGCUGCGAGg -3'
miRNA:   3'- cCGAGCUGGGG-----------ACAaga-CGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 308326 0.65 0.991971
Target:  5'- cGUUCGACCCgUGUgUCUcUCGCGGGg -3'
miRNA:   3'- cCGAGCUGGGgACA-AGAcGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 269549 0.71 0.892686
Target:  5'- uGUUCGACCCgUGU--UGCCGUAGGCc -3'
miRNA:   3'- cCGAGCUGGGgACAagACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 121471 0.7 0.927047
Target:  5'- aGGCUuggugaccCGugCCCggauuccgaggGUUCcGCCACGGGCc -3'
miRNA:   3'- -CCGA--------GCugGGGa----------CAAGaCGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 263190 0.69 0.936764
Target:  5'- cGGCUUGugUCCagGUUUUGCCuuCGAGa -3'
miRNA:   3'- -CCGAGCugGGGa-CAAGACGGu-GUUCg -5'
10468 5' -55 NC_002687.1 + 219608 0.69 0.941296
Target:  5'- aGUUUGACCCUUGcUUCUG--GCAGGCa -3'
miRNA:   3'- cCGAGCUGGGGAC-AAGACggUGUUCG- -5'
10468 5' -55 NC_002687.1 + 48309 0.69 0.953607
Target:  5'- uGGCUCGAUCUuucuUUGUUCUGCUAUu--- -3'
miRNA:   3'- -CCGAGCUGGG----GACAAGACGGUGuucg -5'
10468 5' -55 NC_002687.1 + 159365 0.67 0.975241
Target:  5'- uGCUCGGCCCuCUccaggaUGgCACAAGCc -3'
miRNA:   3'- cCGAGCUGGG-GAcaag--ACgGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 210313 0.68 0.964045
Target:  5'- gGGCgcCGACCUCUgcGUUCUGgCGCucGCc -3'
miRNA:   3'- -CCGa-GCUGGGGA--CAAGACgGUGuuCG- -5'
10468 5' -55 NC_002687.1 + 299665 0.69 0.949715
Target:  5'- cGGCggCGACaCCCUGaUUUGUUGCcAGCa -3'
miRNA:   3'- -CCGa-GCUG-GGGACaAGACGGUGuUCG- -5'
10468 5' -55 NC_002687.1 + 238842 0.72 0.843241
Target:  5'- uGGCggaaagauUCGACagagaCCUGUauuuUCUGCCAUAAGUc -3'
miRNA:   3'- -CCG--------AGCUGg----GGACA----AGACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 247502 0.68 0.970015
Target:  5'- gGGCUUGccaauGCUCUUGUUggugGUCACGAGCg -3'
miRNA:   3'- -CCGAGC-----UGGGGACAAga--CGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 301755 0.71 0.87954
Target:  5'- uGCUCGACCCCUGUgacccagcaucgUCggagaaaaUGCaCGCAAuGCu -3'
miRNA:   3'- cCGAGCUGGGGACA------------AG--------ACG-GUGUU-CG- -5'
10468 5' -55 NC_002687.1 + 200840 0.69 0.945613
Target:  5'- aGGCUCGGCaUCUGcuucugUCUGCCccGCAGGa -3'
miRNA:   3'- -CCGAGCUGgGGACa-----AGACGG--UGUUCg -5'
10468 5' -55 NC_002687.1 + 287699 0.68 0.972718
Target:  5'- uGGCaUCGACCCCaccgugUGUgaagCUGCuCGCuugucaAGGCa -3'
miRNA:   3'- -CCG-AGCUGGGG------ACAa---GACG-GUG------UUCG- -5'
10468 5' -55 NC_002687.1 + 106790 0.67 0.977588
Target:  5'- aGGuCUUGAUCCCcGUUUuaggggucgugaUGUCAUAGGCg -3'
miRNA:   3'- -CC-GAGCUGGGGaCAAG------------ACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 55216 0.71 0.892686
Target:  5'- aGGCcaUCGACUaCUGUUCgucgGCCGCcauGGCa -3'
miRNA:   3'- -CCG--AGCUGGgGACAAGa---CGGUGu--UCG- -5'
10468 5' -55 NC_002687.1 + 89260 0.7 0.932014
Target:  5'- aGCUaggGGCUCCUGcUCUGC-ACGAGCu -3'
miRNA:   3'- cCGAg--CUGGGGACaAGACGgUGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.