miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10468 5' -55 NC_002687.1 + 7702 0.66 0.989693
Target:  5'- -uCUCGAUCCgucgUUGUUCcaguUGCaCACAAGCg -3'
miRNA:   3'- ccGAGCUGGG----GACAAG----ACG-GUGUUCG- -5'
10468 5' -55 NC_002687.1 + 8813 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5'
10468 5' -55 NC_002687.1 + 9074 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5'
10468 5' -55 NC_002687.1 + 11277 0.66 0.986938
Target:  5'- gGGgUCGGCacaacuCCCgugGUUUUGCCGauCGGGCg -3'
miRNA:   3'- -CCgAGCUG------GGGa--CAAGACGGU--GUUCG- -5'
10468 5' -55 NC_002687.1 + 17804 0.66 0.989693
Target:  5'- aGCUCGGCCuCUUGaagCaGCCGCugcGGCu -3'
miRNA:   3'- cCGAGCUGG-GGACaa-GaCGGUGu--UCG- -5'
10468 5' -55 NC_002687.1 + 18863 0.66 0.990888
Target:  5'- gGGCgcggUGGCCuCCUucugCUGCUACAggAGCa -3'
miRNA:   3'- -CCGa---GCUGG-GGAcaa-GACGGUGU--UCG- -5'
10468 5' -55 NC_002687.1 + 48309 0.69 0.953607
Target:  5'- uGGCUCGAUCUuucuUUGUUCUGCUAUu--- -3'
miRNA:   3'- -CCGAGCUGGG----GACAAGACGGUGuucg -5'
10468 5' -55 NC_002687.1 + 55216 0.71 0.892686
Target:  5'- aGGCcaUCGACUaCUGUUCgucgGCCGCcauGGCa -3'
miRNA:   3'- -CCG--AGCUGGgGACAAGa---CGGUGu--UCG- -5'
10468 5' -55 NC_002687.1 + 64596 1.14 0.003778
Target:  5'- gGGCUCGACCCCUGUUCUGCCACAAGCa -3'
miRNA:   3'- -CCGAGCUGGGGACAAGACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 64922 0.67 0.981786
Target:  5'- -cCUCGACCCCaaa--UGCCuCGAGCc -3'
miRNA:   3'- ccGAGCUGGGGacaagACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 85901 0.69 0.939959
Target:  5'- -cCUCGGCUCCUGgagggccacguggucCUGCCGCGccGGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------------GACGGUGU--UCG- -5'
10468 5' -55 NC_002687.1 + 87752 0.69 0.953607
Target:  5'- -aCUCGGCCUCUGguagacgggCUGCU-CAAGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------GACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 89260 0.7 0.932014
Target:  5'- aGCUaggGGCUCCUGcUCUGC-ACGAGCu -3'
miRNA:   3'- cCGAg--CUGGGGACaAGACGgUGUUCG- -5'
10468 5' -55 NC_002687.1 + 105876 0.74 0.76748
Target:  5'- aGCUCG-CUCUUGUUCUGUacgGCGAGCu -3'
miRNA:   3'- cCGAGCuGGGGACAAGACGg--UGUUCG- -5'
10468 5' -55 NC_002687.1 + 106790 0.67 0.977588
Target:  5'- aGGuCUUGAUCCCcGUUUuaggggucgugaUGUCAUAGGCg -3'
miRNA:   3'- -CC-GAGCUGGGGaCAAG------------ACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 108282 0.66 0.985364
Target:  5'- aGGCUCGcUCCUUG-UCgGUCACGGGa -3'
miRNA:   3'- -CCGAGCuGGGGACaAGaCGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 121471 0.7 0.927047
Target:  5'- aGGCUuggugaccCGugCCCggauuccgaggGUUCcGCCACGGGCc -3'
miRNA:   3'- -CCGA--------GCugGGGa----------CAAGaCGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 125471 0.65 0.991971
Target:  5'- aGGaCUUGGCgCa----CUGCCACGAGCa -3'
miRNA:   3'- -CC-GAGCUGgGgacaaGACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 141016 0.7 0.910836
Target:  5'- cGGCUCGAgUCgUUGUcgucaaaggccUCUGCCACAaugauaGGCa -3'
miRNA:   3'- -CCGAGCUgGG-GACA-----------AGACGGUGU------UCG- -5'
10468 5' -55 NC_002687.1 + 159365 0.67 0.975241
Target:  5'- uGCUCGGCCCuCUccaggaUGgCACAAGCc -3'
miRNA:   3'- cCGAGCUGGG-GAcaag--ACgGUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.