miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10468 5' -55 NC_002687.1 + 7702 0.66 0.989693
Target:  5'- -uCUCGAUCCgucgUUGUUCcaguUGCaCACAAGCg -3'
miRNA:   3'- ccGAGCUGGG----GACAAG----ACG-GUGUUCG- -5'
10468 5' -55 NC_002687.1 + 308326 0.65 0.991971
Target:  5'- cGUUCGACCCgUGUgUCUcUCGCGGGg -3'
miRNA:   3'- cCGAGCUGGGgACA-AGAcGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 125471 0.65 0.991971
Target:  5'- aGGaCUUGGCgCa----CUGCCACGAGCa -3'
miRNA:   3'- -CC-GAGCUGgGgacaaGACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 269549 0.71 0.892686
Target:  5'- uGUUCGACCCgUGU--UGCCGUAGGCc -3'
miRNA:   3'- cCGAGCUGGGgACAagACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 287699 0.68 0.972718
Target:  5'- uGGCaUCGACCCCaccgugUGUgaagCUGCuCGCuugucaAGGCa -3'
miRNA:   3'- -CCG-AGCUGGGG------ACAa---GACG-GUG------UUCG- -5'
10468 5' -55 NC_002687.1 + 293612 0.66 0.985364
Target:  5'- aGCUC-ACCCCUGUUCcaugcgUGCuCACAu-- -3'
miRNA:   3'- cCGAGcUGGGGACAAG------ACG-GUGUucg -5'
10468 5' -55 NC_002687.1 + 275684 0.67 0.983649
Target:  5'- aGCU-GACCCCUc-UCgGCCGCGAGa -3'
miRNA:   3'- cCGAgCUGGGGAcaAGaCGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 284662 0.66 0.988379
Target:  5'- aGGCgCaGCCCCUGgugCUGCCGgAAa- -3'
miRNA:   3'- -CCGaGcUGGGGACaa-GACGGUgUUcg -5'
10468 5' -55 NC_002687.1 + 175044 0.66 0.989693
Target:  5'- cGGUUCGAgCCCCUugGUggauUCggaCGCAGGCg -3'
miRNA:   3'- -CCGAGCU-GGGGA--CA----AGacgGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 282304 0.68 0.972718
Target:  5'- cGGCaCcGCCCCUGcucCUGCCGCGAc- -3'
miRNA:   3'- -CCGaGcUGGGGACaa-GACGGUGUUcg -5'
10468 5' -55 NC_002687.1 + 200716 0.68 0.970015
Target:  5'- uGGCgUUGACgUCUGcgaaggCUGCCGCcAGCa -3'
miRNA:   3'- -CCG-AGCUGgGGACaa----GACGGUGuUCG- -5'
10468 5' -55 NC_002687.1 + 8813 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5'
10468 5' -55 NC_002687.1 + 225928 0.73 0.811024
Target:  5'- cGCUcCGGCCCCag--CUGCC-CGAGCa -3'
miRNA:   3'- cCGA-GCUGGGGacaaGACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 170724 0.71 0.87954
Target:  5'- cGGUUCGugCCCcgGUUCguggGCCGgguGGCa -3'
miRNA:   3'- -CCGAGCugGGGa-CAAGa---CGGUgu-UCG- -5'
10468 5' -55 NC_002687.1 + 235767 0.71 0.886216
Target:  5'- cGGCaUCGACCuCCUGgaUUUGuUCGCGGGCu -3'
miRNA:   3'- -CCG-AGCUGG-GGACa-AGAC-GGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 141016 0.7 0.910836
Target:  5'- cGGCUCGAgUCgUUGUcgucaaaggccUCUGCCACAaugauaGGCa -3'
miRNA:   3'- -CCGAGCUgGG-GACA-----------AGACGGUGU------UCG- -5'
10468 5' -55 NC_002687.1 + 283542 0.7 0.904999
Target:  5'- uGCUgCcGCCCCUGUUgCUGCCGCuucggauGCu -3'
miRNA:   3'- cCGA-GcUGGGGACAA-GACGGUGuu-----CG- -5'
10468 5' -55 NC_002687.1 + 85901 0.69 0.939959
Target:  5'- -cCUCGGCUCCUGgagggccacguggucCUGCCGCGccGGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------------GACGGUGU--UCG- -5'
10468 5' -55 NC_002687.1 + 87752 0.69 0.953607
Target:  5'- -aCUCGGCCUCUGguagacgggCUGCU-CAAGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------GACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 9074 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.