miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10478 3' -55.8 NC_002687.1 + 50247 0.66 0.984138
Target:  5'- aGCAAagGGUGAAGGgaaAGCGAuaGGGa- -3'
miRNA:   3'- gCGUUg-CCACUUCCac-UCGCU--CCCac -5'
10478 3' -55.8 NC_002687.1 + 321852 0.66 0.982327
Target:  5'- gCGCucaGGggacUGguGGUGAGCGGGGGc- -3'
miRNA:   3'- -GCGuugCC----ACuuCCACUCGCUCCCac -5'
10478 3' -55.8 NC_002687.1 + 226848 0.66 0.982327
Target:  5'- aCGaUGAUGGUGGAGGcGGGgGAGuuGGUGg -3'
miRNA:   3'- -GC-GUUGCCACUUCCaCUCgCUC--CCAC- -5'
10478 3' -55.8 NC_002687.1 + 130723 0.66 0.980365
Target:  5'- gGCggUGGUGguGGUG-GCGguGGcGGUGg -3'
miRNA:   3'- gCGuuGCCACuuCCACuCGC--UC-CCAC- -5'
10478 3' -55.8 NC_002687.1 + 309964 0.66 0.980365
Target:  5'- gGUAGgGGUGAgcuaGGGggggGGGaagGAGGGUGg -3'
miRNA:   3'- gCGUUgCCACU----UCCa---CUCg--CUCCCAC- -5'
10478 3' -55.8 NC_002687.1 + 296186 0.66 0.980365
Target:  5'- gCGCAuguauuCGGUGgcGG--AGCuGAGGGUGu -3'
miRNA:   3'- -GCGUu-----GCCACuuCCacUCG-CUCCCAC- -5'
10478 3' -55.8 NC_002687.1 + 231606 0.66 0.978245
Target:  5'- aGUggUGGgagUGggGG-GAGUGGGGGg- -3'
miRNA:   3'- gCGuuGCC---ACuuCCaCUCGCUCCCac -5'
10478 3' -55.8 NC_002687.1 + 210438 0.67 0.970874
Target:  5'- aGCGACGGgagcGAcGG-GAGCGAcGGGa- -3'
miRNA:   3'- gCGUUGCCa---CUuCCaCUCGCU-CCCac -5'
10478 3' -55.8 NC_002687.1 + 268101 0.67 0.96806
Target:  5'- gGCuGCGGgGggGG-GGGgGAGGGg- -3'
miRNA:   3'- gCGuUGCCaCuuCCaCUCgCUCCCac -5'
10478 3' -55.8 NC_002687.1 + 103520 0.67 0.96806
Target:  5'- gGCGACGG-GAu-GUGuGCGGGGGa- -3'
miRNA:   3'- gCGUUGCCaCUucCACuCGCUCCCac -5'
10478 3' -55.8 NC_002687.1 + 25930 0.67 0.965058
Target:  5'- aCGCAACGGUcu--GUGccaGGCGAGGGa- -3'
miRNA:   3'- -GCGUUGCCAcuucCAC---UCGCUCCCac -5'
10478 3' -55.8 NC_002687.1 + 307645 0.68 0.957414
Target:  5'- gGCGGCGGUGgcGGUGguggugcuggcacgGGCGgcGGcGGUGc -3'
miRNA:   3'- gCGUUGCCACuuCCAC--------------UCGC--UC-CCAC- -5'
10478 3' -55.8 NC_002687.1 + 2650 0.68 0.954878
Target:  5'- gGCAAUGG-GGAGGUGcGUGgAGuGGUGu -3'
miRNA:   3'- gCGUUGCCaCUUCCACuCGC-UC-CCAC- -5'
10478 3' -55.8 NC_002687.1 + 258784 0.68 0.942857
Target:  5'- uGCAGCGGUGAAGGUcacGAGUucGGcGa- -3'
miRNA:   3'- gCGUUGCCACUUCCA---CUCGcuCC-Cac -5'
10478 3' -55.8 NC_002687.1 + 24058 0.68 0.938427
Target:  5'- gCGuCGGCGGUGAGGGgggGGGUGugcaGGUGc -3'
miRNA:   3'- -GC-GUUGCCACUUCCa--CUCGCuc--CCAC- -5'
10478 3' -55.8 NC_002687.1 + 226772 0.69 0.933783
Target:  5'- gGUAGCGGUGAuggAGGUG-GUGccGGUGc -3'
miRNA:   3'- gCGUUGCCACU---UCCACuCGCucCCAC- -5'
10478 3' -55.8 NC_002687.1 + 69049 0.69 0.923849
Target:  5'- gGCGGCGGUGgcGGUGGuGuCGGcGGUGc -3'
miRNA:   3'- gCGUUGCCACuuCCACU-C-GCUcCCAC- -5'
10478 3' -55.8 NC_002687.1 + 37081 0.69 0.918559
Target:  5'- uGCcAUGGUGAAGGUGAauugugagcaGCGuGGGc- -3'
miRNA:   3'- gCGuUGCCACUUCCACU----------CGCuCCCac -5'
10478 3' -55.8 NC_002687.1 + 288131 0.69 0.918559
Target:  5'- uGCcAUGGUGAAGGUGAauugugaacaGCGuGGGc- -3'
miRNA:   3'- gCGuUGCCACUUCCACU----------CGCuCCCac -5'
10478 3' -55.8 NC_002687.1 + 224195 0.69 0.913053
Target:  5'- gGUGGCGGUGgcGGUG-GCGguGGcGGUGg -3'
miRNA:   3'- gCGUUGCCACuuCCACuCGC--UC-CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.