Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10478 | 5' | -54.6 | NC_002687.1 | + | 77124 | 0.69 | 0.971222 |
Target: 5'- uGGCACCGuucucuccgUCGGGGCCcucgggACACCcUUGGg -3' miRNA: 3'- -CUGUGGC---------AGCCUUGGa-----UGUGGcAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 71708 | 0.69 | 0.971222 |
Target: 5'- cGACAUCGgccgUGGAACCacggACACuaggccgggggCGUCGGg -3' miRNA: 3'- -CUGUGGCa---GCCUUGGa---UGUG-----------GCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 84411 | 0.69 | 0.973808 |
Target: 5'- -uCACCGUgaaCGGAACCacgacCACCGUCa- -3' miRNA: 3'- cuGUGGCA---GCCUUGGau---GUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 167530 | 0.68 | 0.976221 |
Target: 5'- uGCGCCG-CGGAAgCUucgcgGCAaCGUCGGg -3' miRNA: 3'- cUGUGGCaGCCUUgGA-----UGUgGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 25786 | 0.68 | 0.976221 |
Target: 5'- uACGCCGUCGuagcGGuacuCCUGCACCGcCGu -3' miRNA: 3'- cUGUGGCAGC----CUu---GGAUGUGGCaGCc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 71849 | 0.68 | 0.98035 |
Target: 5'- aGACAagagguuUCGUaCGGAguGCCUaaGCGCCGUCGu -3' miRNA: 3'- -CUGU-------GGCA-GCCU--UGGA--UGUGGCAGCc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 307372 | 0.68 | 0.980552 |
Target: 5'- -uCGCUGUCGGcGCCU-CGCCGaUGGc -3' miRNA: 3'- cuGUGGCAGCCuUGGAuGUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 96834 | 0.68 | 0.980552 |
Target: 5'- -uCGCuCG-CGGGGCUUccacuucgcACGCCGUCGGa -3' miRNA: 3'- cuGUG-GCaGCCUUGGA---------UGUGGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 174729 | 0.68 | 0.984265 |
Target: 5'- uGCaACCGcCGGAACCgccggaACCGcCGGa -3' miRNA: 3'- cUG-UGGCaGCCUUGGaug---UGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 85692 | 0.67 | 0.985907 |
Target: 5'- gGAC-CCG-CGGGACCgaugGgACCGaCGGg -3' miRNA: 3'- -CUGuGGCaGCCUUGGa---UgUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 8288 | 0.67 | 0.987414 |
Target: 5'- --aGCUGUCGGAugCUgcuggcggGCACCGUuuucccgcCGGa -3' miRNA: 3'- cugUGGCAGCCUugGA--------UGUGGCA--------GCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 18275 | 0.67 | 0.990052 |
Target: 5'- aACGCCGcCGGGcuGCCUucuACACCaaagcUCGGa -3' miRNA: 3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 18054 | 0.67 | 0.990052 |
Target: 5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3' miRNA: 3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 17943 | 0.67 | 0.990052 |
Target: 5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3' miRNA: 3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 308393 | 0.67 | 0.992237 |
Target: 5'- aGGCcCCGggGGAugCUGCACCaGUUGa -3' miRNA: 3'- -CUGuGGCagCCUugGAUGUGG-CAGCc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 235227 | 0.66 | 0.993086 |
Target: 5'- gGACACCGagauuguUCGGGugaACC-ACGCCGUUa- -3' miRNA: 3'- -CUGUGGC-------AGCCU---UGGaUGUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 204959 | 0.66 | 0.993086 |
Target: 5'- cACGCCGUCGGcgauaGACgCUguggucgACACCGgcuUCGGc -3' miRNA: 3'- cUGUGGCAGCC-----UUG-GA-------UGUGGC---AGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 96947 | 0.66 | 0.993176 |
Target: 5'- aACGgCGUCGGucgaugucgaGGCCUGCACCGg--- -3' miRNA: 3'- cUGUgGCAGCC----------UUGGAUGUGGCagcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 18165 | 0.66 | 0.993176 |
Target: 5'- aACGCCGcCGGGcuACCUucuACACCaaaguUCGGa -3' miRNA: 3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 256581 | 0.66 | 0.993176 |
Target: 5'- cGugACCGUC---GCCUGCGCacccguGUCGGc -3' miRNA: 3'- -CugUGGCAGccuUGGAUGUGg-----CAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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