miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10478 5' -54.6 NC_002687.1 + 83387 1.1 0.00925
Target:  5'- cGACACCGUCGGAACCUACACCGUCGGu -3'
miRNA:   3'- -CUGUGGCAGCCUUGGAUGUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 215652 0.77 0.654813
Target:  5'- -uCGCCGUCGccGAGCCUAuCGCCGUCGc -3'
miRNA:   3'- cuGUGGCAGC--CUUGGAU-GUGGCAGCc -5'
10478 5' -54.6 NC_002687.1 + 100661 0.75 0.77577
Target:  5'- cGACACCGgUGccGCCUuCACCGUCGGc -3'
miRNA:   3'- -CUGUGGCaGCcuUGGAuGUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 117824 0.74 0.818903
Target:  5'- cGGCACCGUCGuccucguucgacgcaGGCgCUGCACCGUCGu -3'
miRNA:   3'- -CUGUGGCAGCc--------------UUG-GAUGUGGCAGCc -5'
10478 5' -54.6 NC_002687.1 + 214983 0.73 0.834022
Target:  5'- cGACACCGgCGGGGCCgagggcggcgACAUCGUCa- -3'
miRNA:   3'- -CUGUGGCaGCCUUGGa---------UGUGGCAGcc -5'
10478 5' -54.6 NC_002687.1 + 205147 0.72 0.89079
Target:  5'- cGCACCGUCGc-GCCgUACACC-UCGGa -3'
miRNA:   3'- cUGUGGCAGCcuUGG-AUGUGGcAGCC- -5'
10478 5' -54.6 NC_002687.1 + 226508 0.72 0.903051
Target:  5'- uGGCGCCGcUGGGACUgaugGCGCCGcUGGg -3'
miRNA:   3'- -CUGUGGCaGCCUUGGa---UGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 180749 0.72 0.903051
Target:  5'- uGACACCGUCGGA-CCaACAUCGacaaaaaccCGGa -3'
miRNA:   3'- -CUGUGGCAGCCUuGGaUGUGGCa--------GCC- -5'
10478 5' -54.6 NC_002687.1 + 5489 0.71 0.919886
Target:  5'- cGAUGCCGcagaUGGAACCUACuauGCCG-CGGa -3'
miRNA:   3'- -CUGUGGCa---GCCUUGGAUG---UGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 300224 0.71 0.919886
Target:  5'- aGGCACCGUUGGuACCgcuucCACCGcCGa -3'
miRNA:   3'- -CUGUGGCAGCCuUGGau---GUGGCaGCc -5'
10478 5' -54.6 NC_002687.1 + 204028 0.71 0.925076
Target:  5'- cGACACaGUCGGccacGAUC-ACGCUGUCGGa -3'
miRNA:   3'- -CUGUGgCAGCC----UUGGaUGUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 217458 0.71 0.934822
Target:  5'- aGCACuCGUgGGAGCCggaGCACuCGUgGGa -3'
miRNA:   3'- cUGUG-GCAgCCUUGGa--UGUG-GCAgCC- -5'
10478 5' -54.6 NC_002687.1 + 277158 0.7 0.939377
Target:  5'- aGGCAgCGcgCGGGGCUUuuGCUGUCGGa -3'
miRNA:   3'- -CUGUgGCa-GCCUUGGAugUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 307648 0.7 0.943723
Target:  5'- uGGgACCgGUCGGGACa-GCACCGUCa- -3'
miRNA:   3'- -CUgUGG-CAGCCUUGgaUGUGGCAGcc -5'
10478 5' -54.6 NC_002687.1 + 224859 0.7 0.943723
Target:  5'- cGACGCgG-CGGcGCCgGCACgGUCGGc -3'
miRNA:   3'- -CUGUGgCaGCCuUGGaUGUGgCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 331654 0.7 0.94786
Target:  5'- cGACACCagcUCGGAcACCgACAgUGUCGGu -3'
miRNA:   3'- -CUGUGGc--AGCCU-UGGaUGUgGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 57116 0.7 0.94786
Target:  5'- aGAC-CCGUCaacgGGAugCUGCAUCGgCGGc -3'
miRNA:   3'- -CUGuGGCAG----CCUugGAUGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 224196 0.7 0.955518
Target:  5'- uGACuugGCCGUCGaugccuuuGAACCgcacacUugACCGUCGGg -3'
miRNA:   3'- -CUG---UGGCAGC--------CUUGG------AugUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 130682 0.69 0.959044
Target:  5'- cGGCAUCGUcCGGGAgCUACuCC-UCGGg -3'
miRNA:   3'- -CUGUGGCA-GCCUUgGAUGuGGcAGCC- -5'
10478 5' -54.6 NC_002687.1 + 57245 0.69 0.968458
Target:  5'- cAUACUucUCGGAACCgGCGCCG-CGGg -3'
miRNA:   3'- cUGUGGc-AGCCUUGGaUGUGGCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.