Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10478 | 5' | -54.6 | NC_002687.1 | + | 83387 | 1.1 | 0.00925 |
Target: 5'- cGACACCGUCGGAACCUACACCGUCGGu -3' miRNA: 3'- -CUGUGGCAGCCUUGGAUGUGGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 8288 | 0.67 | 0.987414 |
Target: 5'- --aGCUGUCGGAugCUgcuggcggGCACCGUuuucccgcCGGa -3' miRNA: 3'- cugUGGCAGCCUugGA--------UGUGGCA--------GCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 96947 | 0.66 | 0.993176 |
Target: 5'- aACGgCGUCGGucgaugucgaGGCCUGCACCGg--- -3' miRNA: 3'- cUGUgGCAGCC----------UUGGAUGUGGCagcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 97637 | 0.66 | 0.994781 |
Target: 5'- cGGCACCGugUCGGcggugACACCGaCGGg -3' miRNA: 3'- -CUGUGGC--AGCCuuggaUGUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 205147 | 0.72 | 0.89079 |
Target: 5'- cGCACCGUCGc-GCCgUACACC-UCGGa -3' miRNA: 3'- cUGUGGCAGCcuUGG-AUGUGGcAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 226508 | 0.72 | 0.903051 |
Target: 5'- uGGCGCCGcUGGGACUgaugGCGCCGcUGGg -3' miRNA: 3'- -CUGUGGCaGCCUUGGa---UGUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 277158 | 0.7 | 0.939377 |
Target: 5'- aGGCAgCGcgCGGGGCUUuuGCUGUCGGa -3' miRNA: 3'- -CUGUgGCa-GCCUUGGAugUGGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 307648 | 0.7 | 0.943723 |
Target: 5'- uGGgACCgGUCGGGACa-GCACCGUCa- -3' miRNA: 3'- -CUgUGG-CAGCCUUGgaUGUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 331654 | 0.7 | 0.94786 |
Target: 5'- cGACACCagcUCGGAcACCgACAgUGUCGGu -3' miRNA: 3'- -CUGUGGc--AGCCU-UGGaUGUgGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 174729 | 0.68 | 0.984265 |
Target: 5'- uGCaACCGcCGGAACCgccggaACCGcCGGa -3' miRNA: 3'- cUG-UGGCaGCCUUGGaug---UGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 84411 | 0.69 | 0.973808 |
Target: 5'- -uCACCGUgaaCGGAACCacgacCACCGUCa- -3' miRNA: 3'- cuGUGGCA---GCCUUGGau---GUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 57116 | 0.7 | 0.94786 |
Target: 5'- aGAC-CCGUCaacgGGAugCUGCAUCGgCGGc -3' miRNA: 3'- -CUGuGGCAG----CCUugGAUGUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 100661 | 0.75 | 0.77577 |
Target: 5'- cGACACCGgUGccGCCUuCACCGUCGGc -3' miRNA: 3'- -CUGUGGCaGCcuUGGAuGUGGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 167530 | 0.68 | 0.976221 |
Target: 5'- uGCGCCG-CGGAAgCUucgcgGCAaCGUCGGg -3' miRNA: 3'- cUGUGGCaGCCUUgGA-----UGUgGCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 117824 | 0.74 | 0.818903 |
Target: 5'- cGGCACCGUCGuccucguucgacgcaGGCgCUGCACCGUCGu -3' miRNA: 3'- -CUGUGGCAGCc--------------UUG-GAUGUGGCAGCc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 224859 | 0.7 | 0.943723 |
Target: 5'- cGACGCgG-CGGcGCCgGCACgGUCGGc -3' miRNA: 3'- -CUGUGgCaGCCuUGGaUGUGgCAGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 307372 | 0.68 | 0.980552 |
Target: 5'- -uCGCUGUCGGcGCCU-CGCCGaUGGc -3' miRNA: 3'- cuGUGGCAGCCuUGGAuGUGGCaGCC- -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 235227 | 0.66 | 0.993086 |
Target: 5'- gGACACCGagauuguUCGGGugaACC-ACGCCGUUa- -3' miRNA: 3'- -CUGUGGC-------AGCCU---UGGaUGUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 214983 | 0.73 | 0.834022 |
Target: 5'- cGACACCGgCGGGGCCgagggcggcgACAUCGUCa- -3' miRNA: 3'- -CUGUGGCaGCCUUGGa---------UGUGGCAGcc -5' |
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10478 | 5' | -54.6 | NC_002687.1 | + | 300224 | 0.71 | 0.919886 |
Target: 5'- aGGCACCGUUGGuACCgcuucCACCGcCGa -3' miRNA: 3'- -CUGUGGCAGCCuUGGau---GUGGCaGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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