miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10478 5' -54.6 NC_002687.1 + 5489 0.71 0.919886
Target:  5'- cGAUGCCGcagaUGGAACCUACuauGCCG-CGGa -3'
miRNA:   3'- -CUGUGGCa---GCCUUGGAUG---UGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 8288 0.67 0.987414
Target:  5'- --aGCUGUCGGAugCUgcuggcggGCACCGUuuucccgcCGGa -3'
miRNA:   3'- cugUGGCAGCCUugGA--------UGUGGCA--------GCC- -5'
10478 5' -54.6 NC_002687.1 + 17832 0.66 0.996066
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaagcUCGGc -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 17943 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 18054 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 18165 0.66 0.993176
Target:  5'- aACGCCGcCGGGcuACCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 18275 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaagcUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 23525 0.66 0.99546
Target:  5'- --aGCCGgguagUCGGggUCaaaUugACCGUCGGc -3'
miRNA:   3'- cugUGGC-----AGCCuuGG---AugUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 25786 0.68 0.976221
Target:  5'- uACGCCGUCGuagcGGuacuCCUGCACCGcCGu -3'
miRNA:   3'- cUGUGGCAGC----CUu---GGAUGUGGCaGCc -5'
10478 5' -54.6 NC_002687.1 + 57116 0.7 0.94786
Target:  5'- aGAC-CCGUCaacgGGAugCUGCAUCGgCGGc -3'
miRNA:   3'- -CUGuGGCAG----CCUugGAUGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 57245 0.69 0.968458
Target:  5'- cAUACUucUCGGAACCgGCGCCG-CGGg -3'
miRNA:   3'- cUGUGGc-AGCCUUGGaUGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 63766 0.66 0.99546
Target:  5'- gGGCGgCGUaUGGGAUCUcgcACGCCGaCGGg -3'
miRNA:   3'- -CUGUgGCA-GCCUUGGA---UGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 71708 0.69 0.971222
Target:  5'- cGACAUCGgccgUGGAACCacggACACuaggccgggggCGUCGGg -3'
miRNA:   3'- -CUGUGGCa---GCCUUGGa---UGUG-----------GCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 71849 0.68 0.98035
Target:  5'- aGACAagagguuUCGUaCGGAguGCCUaaGCGCCGUCGu -3'
miRNA:   3'- -CUGU-------GGCA-GCCU--UGGA--UGUGGCAGCc -5'
10478 5' -54.6 NC_002687.1 + 73351 0.66 0.994781
Target:  5'- aGACGCCGUCGaacAACC-ACGCCauGUCa- -3'
miRNA:   3'- -CUGUGGCAGCc--UUGGaUGUGG--CAGcc -5'
10478 5' -54.6 NC_002687.1 + 77124 0.69 0.971222
Target:  5'- uGGCACCGuucucuccgUCGGGGCCcucgggACACCcUUGGg -3'
miRNA:   3'- -CUGUGGC---------AGCCUUGGa-----UGUGGcAGCC- -5'
10478 5' -54.6 NC_002687.1 + 83387 1.1 0.00925
Target:  5'- cGACACCGUCGGAACCUACACCGUCGGu -3'
miRNA:   3'- -CUGUGGCAGCCUUGGAUGUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 84411 0.69 0.973808
Target:  5'- -uCACCGUgaaCGGAACCacgacCACCGUCa- -3'
miRNA:   3'- cuGUGGCA---GCCUUGGau---GUGGCAGcc -5'
10478 5' -54.6 NC_002687.1 + 85692 0.67 0.985907
Target:  5'- gGAC-CCG-CGGGACCgaugGgACCGaCGGg -3'
miRNA:   3'- -CUGuGGCaGCCUUGGa---UgUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 96834 0.68 0.980552
Target:  5'- -uCGCuCG-CGGGGCUUccacuucgcACGCCGUCGGa -3'
miRNA:   3'- cuGUG-GCaGCCUUGGA---------UGUGGCAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.