miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 70099 0.69 0.847858
Target:  5'- gUGuCCAaagAGGCCACaGAGGCUGCAuCUc -3'
miRNA:   3'- gGC-GGU---UCCGGUGcUUCCGACGUcGG- -5'
10491 3' -58.5 NC_002687.1 + 72212 0.66 0.928665
Target:  5'- gCGCCAGGGUUAcCGAcuggccAGGCccgGCGgauGCCg -3'
miRNA:   3'- gGCGGUUCCGGU-GCU------UCCGa--CGU---CGG- -5'
10491 3' -58.5 NC_002687.1 + 77721 0.67 0.913031
Target:  5'- -gGCaCAAGGCCAaaGAGGCgauGGCCg -3'
miRNA:   3'- ggCG-GUUCCGGUgcUUCCGacgUCGG- -5'
10491 3' -58.5 NC_002687.1 + 83658 0.66 0.933459
Target:  5'- aUGCCGuagaagcucuGGGUCAgCG-AGGCUGCuGUCa -3'
miRNA:   3'- gGCGGU----------UCCGGU-GCuUCCGACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 86081 0.67 0.923662
Target:  5'- -gGCCAgcgGGGCCAgcGGGGCcagUGgGGCCa -3'
miRNA:   3'- ggCGGU---UCCGGUgcUUCCG---ACgUCGG- -5'
10491 3' -58.5 NC_002687.1 + 88928 0.68 0.882864
Target:  5'- gCGCUGgcgcGGGCCGCGAGuucGGCgGCAGaCUc -3'
miRNA:   3'- gGCGGU----UCCGGUGCUU---CCGaCGUC-GG- -5'
10491 3' -58.5 NC_002687.1 + 89480 0.71 0.738884
Target:  5'- gCUGCCGAGGaggaGCGAGGuauuaCUGCAGUCg -3'
miRNA:   3'- -GGCGGUUCCgg--UGCUUCc----GACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 96486 0.66 0.928665
Target:  5'- aCCGCacgGGGGCCGCGAAccGCcaUGUcGCCg -3'
miRNA:   3'- -GGCGg--UUCCGGUGCUUc-CG--ACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 96961 0.67 0.913031
Target:  5'- aUGUCGAGGCCugcacCGGAGcccuGCUGCucuucGCCa -3'
miRNA:   3'- gGCGGUUCCGGu----GCUUC----CGACGu----CGG- -5'
10491 3' -58.5 NC_002687.1 + 98033 0.69 0.816751
Target:  5'- gCCGUCGAGGCCcu--AGGCUucGgGGCCc -3'
miRNA:   3'- -GGCGGUUCCGGugcuUCCGA--CgUCGG- -5'
10491 3' -58.5 NC_002687.1 + 103019 1.14 0.002013
Target:  5'- gCCGCCAAGGCCACGAAGGCUGCAGCCa -3'
miRNA:   3'- -GGCGGUUCCGGUGCUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 103044 0.83 0.177973
Target:  5'- ---nCAAGGCCGCcAAGGCUGCAGCCa -3'
miRNA:   3'- ggcgGUUCCGGUGcUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 103409 0.74 0.578098
Target:  5'- gCCGUCuuGGCUgcagccuugGCGGccuuGGCUGCAGCCu -3'
miRNA:   3'- -GGCGGuuCCGG---------UGCUu---CCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 106984 0.73 0.597096
Target:  5'- aCCGUCAAGcGCCACGGacccgagaccGGGCUGCcuGaCCc -3'
miRNA:   3'- -GGCGGUUC-CGGUGCU----------UCCGACGu-C-GG- -5'
10491 3' -58.5 NC_002687.1 + 108008 0.66 0.946594
Target:  5'- uCCGCCGGGuaccGUUugGAuuGGUUGCuauGCCc -3'
miRNA:   3'- -GGCGGUUC----CGGugCUu-CCGACGu--CGG- -5'
10491 3' -58.5 NC_002687.1 + 120009 0.66 0.933459
Target:  5'- aCGCCAGGGUC-CGAcAGGUUu--GCCa -3'
miRNA:   3'- gGCGGUUCCGGuGCU-UCCGAcguCGG- -5'
10491 3' -58.5 NC_002687.1 + 123705 0.66 0.942422
Target:  5'- cCCGCau-GGUCaACGucGGCaGguGCCg -3'
miRNA:   3'- -GGCGguuCCGG-UGCuuCCGaCguCGG- -5'
10491 3' -58.5 NC_002687.1 + 132915 0.68 0.855222
Target:  5'- aCCcCCGAGGCCGuu-GGcGCUGCAGgCa -3'
miRNA:   3'- -GGcGGUUCCGGUgcuUC-CGACGUCgG- -5'
10491 3' -58.5 NC_002687.1 + 133101 0.69 0.824764
Target:  5'- -aGCCucuauAGGCgaACGGAGGagagaCUGCGGCCc -3'
miRNA:   3'- ggCGGu----UCCGg-UGCUUCC-----GACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 134551 0.68 0.889298
Target:  5'- aCGCCGaugaacAGGCauaGGAGGUgGCAGUCg -3'
miRNA:   3'- gGCGGU------UCCGgugCUUCCGaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.