miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 6317 0.67 0.918451
Target:  5'- aCCgGCCuuGGCCAUGggGGUgcugUGC-GCg -3'
miRNA:   3'- -GG-CGGuuCCGGUGCuuCCG----ACGuCGg -5'
10491 3' -58.5 NC_002687.1 + 10374 0.67 0.907404
Target:  5'- -gGCUgcGGCgACGggGGUggagaagGCAGCg -3'
miRNA:   3'- ggCGGuuCCGgUGCuuCCGa------CGUCGg -5'
10491 3' -58.5 NC_002687.1 + 12135 0.68 0.869415
Target:  5'- gCGCgAGGGCCAaaggaugaaGAagcGGGaaGCGGCCa -3'
miRNA:   3'- gGCGgUUCCGGUg--------CU---UCCgaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 12281 0.69 0.847112
Target:  5'- gCUGCCAAcacacagcccaguGGUCGCGAaacuGGGCgugacGCGGCUg -3'
miRNA:   3'- -GGCGGUU-------------CCGGUGCU----UCCGa----CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 13077 0.67 0.901571
Target:  5'- -aGCCcaAAGGCCGCGAaacuGGGUaUGCAcGCg -3'
miRNA:   3'- ggCGG--UUCCGGUGCU----UCCG-ACGU-CGg -5'
10491 3' -58.5 NC_002687.1 + 18580 0.66 0.928665
Target:  5'- aCGCgAuGGCgGCGggGgaaGCUGUGGUCa -3'
miRNA:   3'- gGCGgUuCCGgUGCuuC---CGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 19909 0.68 0.862409
Target:  5'- aCGCUcGGGUCAUGggGGCUccuGCAcuCCa -3'
miRNA:   3'- gGCGGuUCCGGUGCuuCCGA---CGUc-GG- -5'
10491 3' -58.5 NC_002687.1 + 20717 0.72 0.670639
Target:  5'- cCCGCgAAGGCCACGugcuugucguggagGAauugguGGCUGCcgguGCCg -3'
miRNA:   3'- -GGCGgUUCCGGUGC--------------UU------CCGACGu---CGG- -5'
10491 3' -58.5 NC_002687.1 + 21131 0.75 0.531283
Target:  5'- aCCGUCGuugGGGCUACGGAaguugacaucGGCaccgGCAGCCa -3'
miRNA:   3'- -GGCGGU---UCCGGUGCUU----------CCGa---CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 22101 0.67 0.895535
Target:  5'- uCCGCCAcagcuGGCU-CGAGauucGaGUUGCGGCCg -3'
miRNA:   3'- -GGCGGUu----CCGGuGCUU----C-CGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 30602 0.66 0.932989
Target:  5'- uUGCCucGAGGCCG-GggGGUUGCcgaggacAGUCa -3'
miRNA:   3'- gGCGG--UUCCGGUgCuuCCGACG-------UCGG- -5'
10491 3' -58.5 NC_002687.1 + 37257 0.68 0.855222
Target:  5'- gUGCC--GGCCACGAcgGGGCgcguugaaaccUGUGGCCc -3'
miRNA:   3'- gGCGGuuCCGGUGCU--UCCG-----------ACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 39042 0.67 0.911364
Target:  5'- cCCGCgAAGGCCACGcucaugucgcccgcGAG-CUGCugaAGCa -3'
miRNA:   3'- -GGCGgUUCCGGUGC--------------UUCcGACG---UCGg -5'
10491 3' -58.5 NC_002687.1 + 42206 0.66 0.928665
Target:  5'- gUGUCAGGGaaGCGGAGGCcaaaaaGGCCa -3'
miRNA:   3'- gGCGGUUCCggUGCUUCCGacg---UCGG- -5'
10491 3' -58.5 NC_002687.1 + 45055 0.67 0.923662
Target:  5'- aCGCCGGGGaacaCACGGAGGUaacGC-GCa -3'
miRNA:   3'- gGCGGUUCCg---GUGCUUCCGa--CGuCGg -5'
10491 3' -58.5 NC_002687.1 + 55208 0.68 0.889298
Target:  5'- cCCgGCCAAGGCCAuCGAcuaCUGUucgucGGCCg -3'
miRNA:   3'- -GG-CGGUUCCGGU-GCUuccGACG-----UCGG- -5'
10491 3' -58.5 NC_002687.1 + 55562 0.67 0.923662
Target:  5'- -aGUCGAuGGCCuuGGccGGGUUGguGCCu -3'
miRNA:   3'- ggCGGUU-CCGGugCU--UCCGACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 60272 0.78 0.340739
Target:  5'- gUGCCAaaucaaugAGGCCAgCGAAGGCUGUcuGCCg -3'
miRNA:   3'- gGCGGU--------UCCGGU-GCUUCCGACGu-CGG- -5'
10491 3' -58.5 NC_002687.1 + 66621 0.67 0.912477
Target:  5'- aCCGCCAuGGCCccccuguACGAcGGUU-UGGCCa -3'
miRNA:   3'- -GGCGGUuCCGG-------UGCUuCCGAcGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 66792 0.66 0.946594
Target:  5'- uCCGCCGGGGCCuuGAuguuaaccguAGGUaugucaagUGCGGg- -3'
miRNA:   3'- -GGCGGUUCCGGugCU----------UCCG--------ACGUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.