miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 103019 1.14 0.002013
Target:  5'- gCCGCCAAGGCCACGAAGGCUGCAGCCa -3'
miRNA:   3'- -GGCGGUUCCGGUGCUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 313748 0.72 0.663974
Target:  5'- uCCGCCAA-GCUAUGAuGGCggcGguGCCg -3'
miRNA:   3'- -GGCGGUUcCGGUGCUuCCGa--CguCGG- -5'
10491 3' -58.5 NC_002687.1 + 292435 0.72 0.692432
Target:  5'- gCGCCGcGGCCGCcaccgcuuccaGuuGGCgagGCGGCCg -3'
miRNA:   3'- gGCGGUuCCGGUG-----------CuuCCGa--CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 233853 0.66 0.946594
Target:  5'- aCGCCGcaaAGGCCAUGcuuaaaGCGGCCg -3'
miRNA:   3'- gGCGGU---UCCGGUGCuuccgaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 159970 0.77 0.4013
Target:  5'- gCCGCCAAGGCCaguaaggacaAgGAAGGgaaUGUGGCCa -3'
miRNA:   3'- -GGCGGUUCCGG----------UgCUUCCg--ACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 232762 0.76 0.450982
Target:  5'- aCGagGAGGCCAUGGAGGC-GCuGCCg -3'
miRNA:   3'- gGCggUUCCGGUGCUUCCGaCGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 197942 0.75 0.53036
Target:  5'- gCGCCGAGGCCGaagcagcCGAAGGUgUGguGCg -3'
miRNA:   3'- gGCGGUUCCGGU-------GCUUCCG-ACguCGg -5'
10491 3' -58.5 NC_002687.1 + 280954 0.74 0.540549
Target:  5'- uCgGCgGGGGCCugGguGGCggcagcgGCGGCCg -3'
miRNA:   3'- -GgCGgUUCCGGugCuuCCGa------CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 106984 0.73 0.597096
Target:  5'- aCCGUCAAGcGCCACGGacccgagaccGGGCUGCcuGaCCc -3'
miRNA:   3'- -GGCGGUUC-CGGUGCU----------UCCGACGu-C-GG- -5'
10491 3' -58.5 NC_002687.1 + 303521 0.72 0.663974
Target:  5'- -aGCUu-GGCCuucGCGAAGGCuguccggagUGCAGCCa -3'
miRNA:   3'- ggCGGuuCCGG---UGCUUCCG---------ACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 159923 0.73 0.62192
Target:  5'- aCGCCAAGGCgAaaGAGGCaaaggaagccgggGCGGCCa -3'
miRNA:   3'- gGCGGUUCCGgUgcUUCCGa------------CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 315895 0.74 0.559235
Target:  5'- aCCGCgAGGG--ACGAGGGCUGguGCg -3'
miRNA:   3'- -GGCGgUUCCggUGCUUCCGACguCGg -5'
10491 3' -58.5 NC_002687.1 + 103044 0.83 0.177973
Target:  5'- ---nCAAGGCCGCcAAGGCUGCAGCCa -3'
miRNA:   3'- ggcgGUUCCGGUGcUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 225578 0.73 0.625746
Target:  5'- -aGCUggGGCCggaGCGggGGgUGguGCUg -3'
miRNA:   3'- ggCGGuuCCGG---UGCuuCCgACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 60272 0.78 0.340739
Target:  5'- gUGCCAaaucaaugAGGCCAgCGAAGGCUGUcuGCCg -3'
miRNA:   3'- gGCGGU--------UCCGGU-GCUUCCGACGu-CGG- -5'
10491 3' -58.5 NC_002687.1 + 281181 0.74 0.559235
Target:  5'- -gGCCGAGGCgGCGGaaguacauGGGgUGguGCCa -3'
miRNA:   3'- ggCGGUUCCGgUGCU--------UCCgACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 291312 0.73 0.625746
Target:  5'- gUGCCcagcGGCCGCGAGGcugucguaGCUGCuGCCg -3'
miRNA:   3'- gGCGGuu--CCGGUGCUUC--------CGACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 20717 0.72 0.670639
Target:  5'- cCCGCgAAGGCCACGugcuugucguggagGAauugguGGCUGCcgguGCCg -3'
miRNA:   3'- -GGCGgUUCCGGUGC--------------UU------CCGACGu---CGG- -5'
10491 3' -58.5 NC_002687.1 + 158824 0.78 0.347212
Target:  5'- aCCGCCGucGCCGCcggucgaaagcccGGAGGCgGCGGCCg -3'
miRNA:   3'- -GGCGGUucCGGUG-------------CUUCCGaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 225038 0.76 0.454414
Target:  5'- uCCGagaCAAGGagACGAcugugccggcagcugGGGCUGCAGCCg -3'
miRNA:   3'- -GGCg--GUUCCggUGCU---------------UCCGACGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.