miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 103019 1.14 0.002013
Target:  5'- gCCGCCAAGGCCACGAAGGCUGCAGCCa -3'
miRNA:   3'- -GGCGGUUCCGGUGCUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 103044 0.83 0.177973
Target:  5'- ---nCAAGGCCGCcAAGGCUGCAGCCa -3'
miRNA:   3'- ggcgGUUCCGGUGcUUCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 60272 0.78 0.340739
Target:  5'- gUGCCAaaucaaugAGGCCAgCGAAGGCUGUcuGCCg -3'
miRNA:   3'- gGCGGU--------UCCGGU-GCUUCCGACGu-CGG- -5'
10491 3' -58.5 NC_002687.1 + 158824 0.78 0.347212
Target:  5'- aCCGCCGucGCCGCcggucgaaagcccGGAGGCgGCGGCCg -3'
miRNA:   3'- -GGCGGUucCGGUG-------------CUUCCGaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 309953 0.78 0.377799
Target:  5'- gUCGCgGAGGCCAgcaagcuagaGAAGGUUGCAGCg -3'
miRNA:   3'- -GGCGgUUCCGGUg---------CUUCCGACGUCGg -5'
10491 3' -58.5 NC_002687.1 + 159970 0.77 0.4013
Target:  5'- gCCGCCAAGGCCaguaaggacaAgGAAGGgaaUGUGGCCa -3'
miRNA:   3'- -GGCGGUUCCGG----------UgCUUCCg--ACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 232762 0.76 0.450982
Target:  5'- aCGagGAGGCCAUGGAGGC-GCuGCCg -3'
miRNA:   3'- gGCggUUCCGGUGCUUCCGaCGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 225038 0.76 0.454414
Target:  5'- uCCGagaCAAGGagACGAcugugccggcagcugGGGCUGCAGCCg -3'
miRNA:   3'- -GGCg--GUUCCggUGCU---------------UCCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 299249 0.76 0.46828
Target:  5'- gCGCCugaauuccuuGGCCGCgcccGAGGGCaGCAGCCa -3'
miRNA:   3'- gGCGGuu--------CCGGUG----CUUCCGaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 197942 0.75 0.53036
Target:  5'- gCGCCGAGGCCGaagcagcCGAAGGUgUGguGCg -3'
miRNA:   3'- gGCGGUUCCGGU-------GCUUCCG-ACguCGg -5'
10491 3' -58.5 NC_002687.1 + 21131 0.75 0.531283
Target:  5'- aCCGUCGuugGGGCUACGGAaguugacaucGGCaccgGCAGCCa -3'
miRNA:   3'- -GGCGGU---UCCGGUGCUU----------CCGa---CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 280954 0.74 0.540549
Target:  5'- uCgGCgGGGGCCugGguGGCggcagcgGCGGCCg -3'
miRNA:   3'- -GgCGgUUCCGGugCuuCCGa------CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 315895 0.74 0.559235
Target:  5'- aCCGCgAGGG--ACGAGGGCUGguGCg -3'
miRNA:   3'- -GGCGgUUCCggUGCUUCCGACguCGg -5'
10491 3' -58.5 NC_002687.1 + 281181 0.74 0.559235
Target:  5'- -gGCCGAGGCgGCGGaaguacauGGGgUGguGCCa -3'
miRNA:   3'- ggCGGUUCCGgUGCU--------UCCgACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 103409 0.74 0.578098
Target:  5'- gCCGUCuuGGCUgcagccuugGCGGccuuGGCUGCAGCCu -3'
miRNA:   3'- -GGCGGuuCCGG---------UGCUu---CCGACGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 106984 0.73 0.597096
Target:  5'- aCCGUCAAGcGCCACGGacccgagaccGGGCUGCcuGaCCc -3'
miRNA:   3'- -GGCGGUUC-CGGUGCU----------UCCGACGu-C-GG- -5'
10491 3' -58.5 NC_002687.1 + 302816 0.73 0.606631
Target:  5'- gUGCCAaacgcGGGCCgACGAGGGCUucuaCAGCUg -3'
miRNA:   3'- gGCGGU-----UCCGG-UGCUUCCGAc---GUCGG- -5'
10491 3' -58.5 NC_002687.1 + 308774 0.73 0.616183
Target:  5'- cCCGCCGGGGUCGcCGGGuGGCUGguaGGCg -3'
miRNA:   3'- -GGCGGUUCCGGU-GCUU-CCGACg--UCGg -5'
10491 3' -58.5 NC_002687.1 + 159923 0.73 0.62192
Target:  5'- aCGCCAAGGCgAaaGAGGCaaaggaagccgggGCGGCCa -3'
miRNA:   3'- gGCGGUUCCGgUgcUUCCGa------------CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 145833 0.73 0.625746
Target:  5'- cUCGCCGAGGCgCGCGccGGGGCgcuggGuCAGCUc -3'
miRNA:   3'- -GGCGGUUCCG-GUGC--UUCCGa----C-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.