miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 5' -57.2 NC_002687.1 + 200212 0.66 0.939321
Target:  5'- gGAGGCcGguGCCaAAGAuucCGGCCccGACGAc -3'
miRNA:   3'- -UUCCGaCguCGG-UUCU---GCCGG--UUGUU- -5'
10491 5' -57.2 NC_002687.1 + 259784 0.66 0.936505
Target:  5'- gGAGGUccauuucucgagcgaUGUucauGGCCAAGGCGGgCAGCGc -3'
miRNA:   3'- -UUCCG---------------ACG----UCGGUUCUGCCgGUUGUu -5'
10491 5' -57.2 NC_002687.1 + 96445 0.66 0.934582
Target:  5'- gAAGGCgaaGCuGCCGAauuuccGACGGCguGCGAa -3'
miRNA:   3'- -UUCCGa--CGuCGGUU------CUGCCGguUGUU- -5'
10491 5' -57.2 NC_002687.1 + 18642 0.66 0.929616
Target:  5'- gAAGGCaGUGGCCAGGA-GGCCuguccaGACGGa -3'
miRNA:   3'- -UUCCGaCGUCGGUUCUgCCGG------UUGUU- -5'
10491 5' -57.2 NC_002687.1 + 35122 0.66 0.92442
Target:  5'- cAGGCUuugcGCGGCCAAGcuCGGCU-ACAc -3'
miRNA:   3'- uUCCGA----CGUCGGUUCu-GCCGGuUGUu -5'
10491 5' -57.2 NC_002687.1 + 226035 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 226407 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 215228 0.66 0.918997
Target:  5'- cGGGGC-GCGGUCAAGAgGGUauuuCGACAGg -3'
miRNA:   3'- -UUCCGaCGUCGGUUCUgCCG----GUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 283348 0.66 0.918997
Target:  5'- --aGCUGCuacAGCCAcGGCGGgCGGCAAa -3'
miRNA:   3'- uucCGACG---UCGGUuCUGCCgGUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 225849 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 225668 0.66 0.913345
Target:  5'- -uGGCguggGCGGCCGggacgaacAGACGGCUAcucagGCAGc -3'
miRNA:   3'- uuCCGa---CGUCGGU--------UCUGCCGGU-----UGUU- -5'
10491 5' -57.2 NC_002687.1 + 252159 0.67 0.901364
Target:  5'- -uGGUUGCAGCCAguGGACGcGCgCAcCGGa -3'
miRNA:   3'- uuCCGACGUCGGU--UCUGC-CG-GUuGUU- -5'
10491 5' -57.2 NC_002687.1 + 122201 0.67 0.901364
Target:  5'- --cGCgGCGGCCAAGaagaagaugGCGGCCGAUGGa -3'
miRNA:   3'- uucCGaCGUCGGUUC---------UGCCGGUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 12891 0.67 0.895038
Target:  5'- aGAGGUcgcaaGCGGCCGAGGCcGGCgAGCu- -3'
miRNA:   3'- -UUCCGa----CGUCGGUUCUG-CCGgUUGuu -5'
10491 5' -57.2 NC_002687.1 + 285089 0.67 0.888493
Target:  5'- gAAGGCUGguGCUuguuGGGGCGGgCGAUu- -3'
miRNA:   3'- -UUCCGACguCGG----UUCUGCCgGUUGuu -5'
10491 5' -57.2 NC_002687.1 + 200539 0.68 0.867578
Target:  5'- gAAGGCUGgAGCCGacgucgacgcucGGGCGGaagaCGGCAu -3'
miRNA:   3'- -UUCCGACgUCGGU------------UCUGCCg---GUUGUu -5'
10491 5' -57.2 NC_002687.1 + 253977 0.68 0.867578
Target:  5'- cGAGGCgGaCA-CCAuGACGGCCGACGc -3'
miRNA:   3'- -UUCCGaC-GUcGGUuCUGCCGGUUGUu -5'
10491 5' -57.2 NC_002687.1 + 309930 0.68 0.852616
Target:  5'- gAAGGUUGCAGCgcGGGCGGCaccgcCGACGu -3'
miRNA:   3'- -UUCCGACGUCGguUCUGCCG-----GUUGUu -5'
10491 5' -57.2 NC_002687.1 + 297288 0.68 0.852616
Target:  5'- cGGGgaGCAGCCAAaugaucucGAUGGCCGuCGGg -3'
miRNA:   3'- uUCCgaCGUCGGUU--------CUGCCGGUuGUU- -5'
10491 5' -57.2 NC_002687.1 + 226226 0.68 0.83689
Target:  5'- -uGGCguggGCGGCCGggacgaacAGACGGCUAcGCAGg -3'
miRNA:   3'- uuCCGa---CGUCGGU--------UCUGCCGGU-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.